Michael,
Do you know if the APBS Tools plugin uses blt? I have working under
the assumption that these problems are a manifestation of breakage in
the existing blt 2.4z. Have you consider changing ABPS Tools to
function more like pynmr (ie open its own window instead of a dialog)?
I don't think I've ever seen pynmr crash pymol.
Jack
On Wed, Dec 09, 2009 at 11:14:08AM -0500, Michael Lerner wrote:
> Hi,
>
> When I try that on my Ubuntu image, it makes it so that quitting the plugin
> causes PyMOL to quit.
>
> I don't really know much about tk. If there's a standard way to open /
> destroy the plugin, I'd be glad to change things around. As far as I know,
> the relevant bits are
>
> def __init__(self,app):
> self.parent = app.root
>
> # Create the dialog.
> self.dialog = Pmw.Dialog(self.parent,
> buttons = ('Register APBS Use', 'Register
> PDB2PQR Use', 'Set grid', 'Run APBS', 'Exit APBS tools'),
> title = 'PyMOL APBS Tools',
> command = self.execute)
> self.dialog.protocol('WM_DELETE_WINDOW',self.quit)
> self.dialog.withdraw()
> Pmw.setbusycursorattributes(self.dialog.component('hull'))
> ...
> self.showAppModal()
>
> def showAppModal(self):
> #self.dialog.activate(geometry = 'centerscreenfirst', globalMode =
> 'nograb')
> #self.dialog.activate(geometry = 'centerscreenalways', globalMode =
> 'nograb')
> #self.dialog.activate(geometry = 'centerscreenfirst')
> self.dialog.show()
>
> def execute(self, result, refocus=True):
> if result == 'Register APBS Use':
> ...
> else:
> #
> # Doing it this way takes care of clicking on the x in the top
> of the
> # window, which as result set to None.
> #
> if __name__ == '__main__':
> #
> # dies with traceback, but who cares
> #
> self.parent.destroy()
> else:
> #self.dialog.deactivate(result)
> global APBS_BINARY_LOCATION, APBS_PSIZE_LOCATION
> APBS_BINARY_LOCATION = self.binary.getvalue()
> APBS_PSIZE_LOCATION = self.psize.getvalue()
> #self.dialog.withdraw()
> #self.dialog.destroy() # stops CPU hogging, perhaps fixes
> Ubuntu bug MGL
> self.quit()
> def quit(self):
> self.dialog.quit()
> self.parent.quit()
> #self.dialog.withdraw()
> #self.dialog.destroy()
>
>
> by the way, we've started a google wave about the plugin. I can add any of
> you that want to be on it.
>
> -michael
>
> On Sat, Dec 5, 2009 at 12:02 AM, William G. Scott <
> [email protected]> wrote:
>
> > Hi Jack:
> >
> > Again, many thanks. It has been a busy day so I didn't get a chance to try
> > this until just now, but it fixed this highly annoying problem immediately.
> >
> > I'll pass it along upstream.
> >
> > All the best,
> >
> > Bill
> >
> >
> > On Dec 4, 2009, at 8:25 AM, Jack Howarth wrote:
> >
> > > Bill,
> > > Looking through the changes in the abps_tools.py script from
> > > pymol 1.r1 to the current 1.2r2, I believe I've found the offending
> > > code. If I revert the change...
> > >
> > > --- modules/pmg_tk/startup/apbs_tools.py.broken 2009-12-04
> > 11:11:03.000000000 -0500
> > > +++ modules/pmg_tk/startup/apbs_tools.py 2009-12-04
> > 11:18:08.000000000 -0500
> > > @@ -1124,7 +1124,7 @@
> > > self.showAppModal()
> > >
> > > def showAppModal(self):
> > > - self.dialog.activate(geometry = 'centerscreenfirst', globalMode
> > = 'nograb')
> > > + #self.dialog.activate(geometry = 'centerscreenfirst', globalMode
> > = 'nograb')
> > > self.dialog.show()
> > > #self.dialog.activate(geometry = 'centerscreenalways')
> > >
> > > I find that the use of the ABPS tools window no longer nukes the use of
> > the main tk
> > > interface menus afterwards. You may want to update the current pymol-py
> > package with
> > > that change. I haven't tested it yet but this might also solve the same
> > issue with
> > > pymol-py and the current x86_64 blt package.
> > > Jack
> >
> >
>
>
> --
> Michael Lerner, Ph.D.
> IRTA Postdoctoral Fellow
> Laboratory of Computational Biology NIH/NHLBI
> 5635 Fishers Lane, Room T909, MSC 9314
> Rockville, MD 20852 (UPS/FedEx/Reality)
> Bethesda MD 20892-9314 (USPS)
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