Hi,
I am not the maintainer of atlas, so CC-ing fink-devel.
I have less knowledge about atlas, I just know that its build system is
highly non-standard and difficult for me to comprehend.
Fang
> Those lines were not in the gmp.info that was in the stable folder but was
> in the file located in the unstable folder. I added it and commented out
> the old one and the installation continued for over an hour until I got the
> following error:
>
> ERROR: Y[238], correct=0.449648, computed=0.449648
> ERROR: Y[585], correct=-0.014062, computed=-0.014062
> ITST N alpha incX incY TEST
> ====== ======== ======== ==== ==== ======
> 0 777 1.00 1 1 PASSED
> 1 777 -1.00 1 1 PASSED
> 2 777 0.90 1 1 PASSED
> 3 777 1.00 1 -1 PASSED
> 4 777 -1.00 1 -1 PASSED
> 5 777 0.90 1 -1 PASSED
> 6 777 1.00 1 3 PASSED
> 7 777 -1.00 1 3 PASSED
> 8 777 0.90 1 3 PASSED
> 9 777 1.00 1 -2 PASSED
> 10 777 -1.00 1 -2 PASSED
> 11 777 0.90 1 -2 PASSED
> 12 777 1.00 -1 1 PASSED
> 13 777 -1.00 -1 1 PASSED
> 14 777 0.90 -1 1 PASSED
> 15 777 1.00 -1 -1 PASSED
> 16 777 -1.00 -1 -1 PASSED
> 17 777 0.90 -1 -1 PASSED
> 18 777 1.00 -1 3 PASSED
> 19 777 -1.00 -1 3 PASSED
> 20 777 0.90 -1 3 FAILED
> 21 777 1.00 -1 -2 PASSED
> 22 777 -1.00 -1 -2 PASSED
> 23 777 0.90 -1 -2 PASSED
> 24 777 1.00 2 1 PASSED
> 25 777 -1.00 2 1 PASSED
> 26 777 0.90 2 1 PASSED
> 27 777 1.00 2 -1 PASSED
> 28 777 -1.00 2 -1 PASSED
> 29 777 0.90 2 -1 PASSED
> 30 777 1.00 2 3 PASSED
> 31 777 -1.00 2 3 PASSED
> 32 777 0.90 2 3 PASSED
> 33 777 1.00 2 -2 PASSED
> 34 777 -1.00 2 -2 PASSED
> 35 777 0.90 2 -2 PASSED
> 36 777 1.00 -3 1 PASSED
> 37 777 -1.00 -3 1 PASSED
> 38 777 0.90 -3 1 PASSED
> 39 777 1.00 -3 -1 PASSED
> 40 777 -1.00 -3 -1 PASSED
> 41 777 0.90 -3 -1 PASSED
> 42 777 1.00 -3 3 PASSED
> 43 777 -1.00 -3 3 PASSED
> 44 777 0.90 -3 3 PASSED
> 45 777 1.00 -3 -2 PASSED
> 46 777 -1.00 -3 -2 PASSED
> 47 777 0.90 -3 -2 PASSED
> 1 of 48 CPSC TESTS FAILED!!
>
> make[8]: *** [dcpsctest] Error 1
> TST: make dcpsctest urout=cpsc1_x1y1.c opt=""
> rm -f dcpsc.c dcpsc.o
> cp
> /sw/src/fink.build/atlas-3.9.11-1/bld/../ATLAS//tune/blas/level1/CPSC/cpsc1_x1y1.c
> dcpsc.c
> gcc -DL2SIZE=4194304 -I/sw/src/fink.build/atlas-3.9.11-1/bld/include
> -I/sw/src/fink.build/atlas-3.9.11-1/bld/../ATLAS//include
> -I/sw/src/fink.build/atlas-3.9.11-1/bld/../ATLAS//include/contrib -DAdd_
> -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_UNKNOWNx86
> -DATL_CPUMHZ=2000 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_GAS_x8632
> -DATL_FULL_LAPACK -DATL_NCPU=8 -O -fomit-frame-pointer -m32 -DDREAL -c
> dcpsc.c
> gcc -DL2SIZE=4194304 -I/sw/src/fink.build/atlas-3.9.11-1/bld/include
> -I/sw/src/fink.build/atlas-3.9.11-1/bld/../ATLAS//include
> -I/sw/src/fink.build/atlas-3.9.11-1/bld/../ATLAS//include/contrib -DAdd_
> -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_UNKNOWNx86
> -DATL_CPUMHZ=2000 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_GAS_x8632
> -DATL_FULL_LAPACK -DATL_NCPU=8 -fPIC -O3 -fomit-frame-pointer -mfpmath=387
> -m32 -o xdcpsctst dcpsctest.o \
> ATL_dcpsc_stub.o dcpsc.o
> /sw/src/fink.build/atlas-3.9.11-1/bld/lib/libtstatlas.a -lpthread -lm
> /sw/src/fink.build/atlas-3.9.11-1/bld/bin/ATLrun.sh
> /sw/src/fink.build/atlas-3.9.11-1/bld/tune/blas/level1 xdcpsctst -n 777
> ITST N alpha incX incY TEST
> ====== ======== ======== ==== ==== ======
> 0 777 1.00 1 1 PASSED
> 1 777 -1.00 1 1 PASSED
> 2 777 0.90 1 1 PASSED
> ALL CPSC SANITY TESTS PASSED.
>
> make[7]: *** [dinstall_cpsc] Bus error
> make[6]: *** [Make_dcpsc] Error 2
> make[5]: *** [dgen] Error 2
> make[4]: *** [dlib] Error 2
> make[3]: *** [lib.grd] Error 2
> make[2]: *** [IStage1] Error 2
> ERROR 577 DURING CACHESIZE SEARCH!!. CHECK INSTALL_LOG/Stage1.log FOR
> DETAILS.
> cd /sw/src/fink.build/atlas-3.9.11-1/bld ; make error_report
> make -f Make.top error_report
> uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
> gcc -v 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
> Using built-in specs.
> Target: i386-apple-darwin10.7.1
> Configured with: ../gcc-4.4.4/configure --prefix=/sw --prefix=/sw/lib/gcc4.4
> --mandir=/sw/share/man --infodir=/sw/lib/gcc4.4/info
> --enable-languages=c,c++,fortran,objc,obj-c++,java --with-gmp=/sw
> --with-libiconv-prefix=/sw --with-ppl=/sw --with-cloog=/sw --with-mpc=/sw
> --with-system-zlib --x-includes=/usr/X11R6/include
> --x-libraries=/usr/X11R6/lib --program-suffix=-fsf-4.4
> Thread model: posix
> gcc version 4.4.4 (GCC)
> gcc -V 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
> gcc: '-V' option must have argument
> make[4]: [error_report] Error 1 (ignored)
> gcc --version 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
> tar cf error_UNKNOWNx8632SSE3.tar Make.inc bin/INSTALL_LOG/*
> gzip --best error_UNKNOWNx8632SSE3.tar
> mv error_UNKNOWNx8632SSE3.tar.gz error_UNKNOWNx8632SSE3.tgz
> Error report error_<ARCH>.tgz has been created in your top-level ATLAS
> directory. Be sure to include this file in any help request.
> cat: ../../CONFIG/error.txt: No such file or directory
> cat: ../../CONFIG/error.txt: No such file or directory
> make[1]: *** [build] Error 255
> make: *** [build] Error 2
> ### execution of /var/tmp/tmp.2.yfHGVX failed, exit code 2
> Removing runtime build-lock...
> Removing build-lock package...
> /sw/bin/dpkg-lockwait -r fink-buildlock-atlas-3.9.11-1
> (Reading database ... 12767 files and directories currently installed.)
> Removing fink-buildlock-atlas-3.9.11-1 ...
> Failed: phase compiling: atlas-3.9.11-1 failed
>
>
> Argyris
>
> On Tue, Mar 15, 2011 at 3:41 PM, David Fang <f...@csl.cornell.edu> wrote:
>
>> Can you confirm that your
>>
>> /sw/fink/dists/stable/main/finkinfo/libs/gmp.info
>> /sw/fink/dists/unstable/main/finkinfo/libs/gmp.info
>>
>> contain the lines (in PatchScript):
>> <quote>
>> # gmp4's configure isn't aware of corei, so the next best is core2
>> sed 's|corei[a-z]*|core2|g' ../gmp-trunk-*-config.guess > ./config.guess
>> </quote>
>>
>> I don't think you're sync'd up.
>>
>> Fang
>>
>>
>> Still having basically the same problem except the compiling problem is
>>> with
>>> gmp-4.3.2-7 instead of -5:
>>>
>>> checking build system type... Invalid configuration
>>> `corei-apple-darwin10.7.1': machine `corei-apple' not recognized
>>> configure: error: /bin/sh ../config.sub corei-apple-darwin10.7.1 failed
>>> ### execution of /var/tmp/tmp.2.PK4iGa failed, exit code 1
>>> Removing runtime build-lock...
>>> Removing build-lock package...
>>> /sw/bin/dpkg-lockwait -r fink-buildlock-gmp-4.3.2-7
>>> (Reading database ... 4408 files and directories currently installed.)
>>> Removing fink-buildlock-gmp-4.3.2-7 ...
>>> Failed: phase compiling: gmp-4.3.2-7 failed
>>>
>>>
>>> Argyris
>>>
>>> On Tue, Mar 15, 2011 at 3:15 PM, David Fang <f...@csl.cornell.edu> wrote:
>>>
>>> Looks like I mis-sync'd. selfupdate and try again now.
>>>>
>>>> Fang
>>>>
>>>>
>>>> Hi,
>>>>
>>>>>
>>>>> I did fink selfupdate and tried to install again. The output was much
>>>>> shorter this time but had the same flavor:
>>>>>
>>>>> checking build system type... Invalid configuration
>>>>> `corei-apple-darwin10.7.1': machine `corei-apple' not recognized
>>>>> configure: error: /bin/sh ../config.sub corei-apple-darwin10.7.1 failed
>>>>> ### execution of /var/tmp/tmp.2.SadDxD failed, exit code 1
>>>>> Removing runtime build-lock...
>>>>> Removing build-lock package...
>>>>> /sw/bin/dpkg-lockwait -r fink-buildlock-gmp-4.3.2-7
>>>>> (Reading database ... 4408 files and directories currently installed.)
>>>>> Removing fink-buildlock-gmp-4.3.2-7 ...
>>>>> Failed: phase compiling: gmp-4.3.2-7 failed
>>>>>
>>>>> Did I miss something?
>>>>>
>>>>> Argyris
>>>>>
>>>>> On Tue, Mar 15, 2011 at 1:54 PM, David Fang <f...@csl.cornell.edu>
>>>>> wrote:
>>>>>
>>>>> Hi,
>>>>>
>>>>>> I fixed this on the unstable tree recently. I've just now pushed
>>>>>> the same fix to stable. fink selfupdate, and try again.
>>>>>>
>>>>>> Fang
>>>>>>
>>>>>>
>>>>>>
>>>>>> Hi,
>>>>>>
>>>>>>
>>>>>>> In using fink to install atlas, I run into the following error (this
>>>>>>> is
>>>>>>> the end of the large output that I have):
>>>>>>>
>>>>>>> Undefined symbols:
>>>>>>> "___sync_fetch_and_add_4", referenced from:
>>>>>>> check_mpq() in t-assign.o
>>>>>>> check_mpq() in t-assign.o
>>>>>>> check_mpq() in t-assign.o
>>>>>>> check_mpq() in t-assign.o
>>>>>>> check_mpq() in t-assign.o
>>>>>>> check_mpq() in t-assign.o
>>>>>>> check_mpq() in t-assign.o
>>>>>>> check_mpq() in t-assign.o
>>>>>>> check_mpq() in t-assign.o
>>>>>>> check_mpq() in t-assign.o
>>>>>>> check_mpq() in t-assign.o
>>>>>>> check_mpf() in t-assign.o
>>>>>>> check_mpf() in t-assign.o
>>>>>>> check_mpf() in t-assign.o
>>>>>>> check_mpf() in t-assign.o
>>>>>>> check_mpf() in t-assign.o
>>>>>>> check_mpf() in t-assign.o
>>>>>>> check_mpf() in t-assign.o
>>>>>>> check_mpf() in t-assign.o
>>>>>>> check_mpf() in t-assign.o
>>>>>>> check_mpf() in t-assign.o
>>>>>>> check_mpf() in t-assign.o
>>>>>>> check_mpz() in t-assign.o
>>>>>>> check_mpz() in t-assign.o
>>>>>>> check_mpz() in t-assign.o
>>>>>>> check_mpz() in t-assign.o
>>>>>>> check_mpz() in t-assign.o
>>>>>>> check_mpz() in t-assign.o
>>>>>>> check_mpz() in t-assign.o
>>>>>>> check_mpz() in t-assign.o
>>>>>>> check_mpz() in t-assign.o
>>>>>>> check_mpz() in t-assign.o
>>>>>>> check_mpz() in t-assign.o
>>>>>>> ld: symbol(s) not found
>>>>>>> collect2: ld returned 1 exit status
>>>>>>> make[4]: *** [t-assign] Error 1
>>>>>>> make[3]: *** [check-am] Error 2
>>>>>>> make[2]: *** [check-recursive] Error 1
>>>>>>> make[1]: *** [check-recursive] Error 1
>>>>>>> make: *** [check] Error 2
>>>>>>> ### execution of /var/tmp/tmp.1.3nCrv4 failed, exit code 2
>>>>>>> Removing runtime build-lock...
>>>>>>> Removing build-lock package...
>>>>>>> /sw/bin/dpkg-lockwait -r fink-buildlock-gmp-4.3.2-5
>>>>>>> (Reading database ... 4408 files and directories currently installed.)
>>>>>>> Removing fink-buildlock-gmp-4.3.2-5 ...
>>>>>>> Failed: phase compiling: gmp-4.3.2-5 failed
>>>>>>>
>>>>>>> Before reporting any errors, please run "fink selfupdate" and
>>>>>>> try again. If you continue to have issues, please check to see if the
>>>>>>> FAQ on fink's website solves the problem. If not, ask on the
>>>>>>> fink-users
>>>>>>> or fink-beginners mailing lists, with a carbon copy to the maintainer:
>>>>>>>
>>>>>>> David Fang <fang...@users.sourceforge.net>
>>>>>>>
>>>>>>> Note that this is preferable to emailing the maintainer directly,
>>>>>>> since
>>>>>>> most fink package maintainers do not have access to all possible
>>>>>>> hardware and software configurations.
>>>>>>>
>>>>>>> I have gcc-4.2.1 installed. How can I fix this?
>>>>>>>
>>>>>>> Argyris
>>>>>>>
>>>>>>>
>>>>>>> David Fang
>>>>>>>
>>>>>> http://www.csl.cornell.edu/~fang/
>>>>>> http://www.achronix.com/
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>> David Fang
>>>> http://www.csl.cornell.edu/~fang/
>>>> http://www.achronix.com/
>>>>
>>>>
>>>>
>>>
>> David Fang
>> http://www.csl.cornell.edu/~fang/
>> http://www.achronix.com/
>>
>>
>
David Fang
http://www.csl.cornell.edu/~fang/
http://www.achronix.com/
------------------------------------------------------------------------------
Colocation vs. Managed Hosting
A question and answer guide to determining the best fit
for your organization - today and in the future.
http://p.sf.net/sfu/internap-sfd2d
_______________________________________________
Fink-devel mailing list
Fink-devel@lists.sourceforge.net
http://news.gmane.org/gmane.os.apple.fink.devel
Subscription management:
https://lists.sourceforge.net/lists/listinfo/fink-devel
