Dear Koen et al:

The reason for the inclusion of scipy it to support two pymol plugins:  APBS 
(an electrostatics program that is quite popular amongst structural molecular 
biologists) and a py-nmr plugin (of use to NMR spectroscopists).  There may be 
other reasons as well that I am not aware of.

Please note, even if the plugins that I and other maintainers in this package's 
history were removed, and the dependency upon scipy, there would STILL be a 
required dependency on gcc46 (or some form of gfortran) because of the python 
gui, i.e., the tkinter python megawidgets has a dependency upon BLT (a tcltk 
widget), and BLT has a dependency upon a fortran component.  Omitting the 
fortran components from BLT still allows it to compile, but it is not the 
fully-enabled BLT required by some other packages.

So we are doomed, unless we want to create a separate set of dependencies for a 
slimmed-down pymol.  I am willing to do this, but this does come with some 
overhead.

Bill



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