[Fink-users] hdf5 update fails

[Jens N�ckel]

Hi,

after selfupdate, I did an update-all today. A failure occured
with hdf5. Here are the last lines:

...
gcc .libs/dtypesS.o -g -O2 -o .libs/dtypes dtypes.o ./.libs/libh5test.a -L/sw/lib -L../src/.libs -lhdf5 -lz -lm
ld: Undefined symbols:
_H5Tget_member_index
make[2]: *** [dtypes] Error 1
make[1]: *** [tests] Error 1
make: *** [all] Error 2
### execution of make failed, exit code 2
Failed: compiling hdf5-1.4.4-1 failed

The first thing that I noticed is a problem with dlcompat.
The following appears in config.log:

configure:3709: checking dlfcn.h presence
configure:3716: gcc -E conftest.c
configure:3712: header file 'dlfcn.h' not found
cpp-precomp: warning: errors during smart preprocessing, retrying in basic mode
configure:3722: $? = 1
configure: failed program was:
#line 3711 "configure"
#include "confdefs.h"
#include <dlfcn.h>
configure:3740: result: no
configure:3758: checking for dlfcn.h
configure:3765: result: no


I do have the latest version of dlcompat:
pkg dlcompat version 20020929-1
and the header files are in /sw/include.

So it looks like this is a bug in the configuration.

Regards,
Jens



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