FYI,
The upstream developer thinks he knows what's wrong, and will try to
post an update next week.
- Koen.
On Feb 4, 2006, at 2:11 PM, Robert T Wyatt wrote:
Koen van der Drift wrote:
If you get it and it still fails, could you mail me the output of
the terminal? I will then contact the developer of Bio::Emboss,
and see if he has a clue.
cheers,
- Koen.
Hi Koen,
I've placed the output here (131k with environment info at top):
http://66-90-146-246.dyn.grandenetworks.net/~robertwyatt/fink/bio-
emboss-pm586.txt
It is failing a test:
Manifying blib/man3/Bio::Emboss.3pm
make test
PERL_DL_NONLAZY=1 /sw/bin/perl5.8.6 "-MExtUtils::Command::MM" "-e"
"test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/1....dyld: /sw/bin/perl5.8.6 Undefined symbols:
/sw/src/fink.build/bio-emboss-pm586-1.0-1/Bio-Emboss-1.0/blib/arch/
auto/Bio/Emboss/Emboss.bundle undefined reference to
_ajAlignWriteClose expected to be defined in a dynamic image
/sw/src/fink.build/bio-emboss-pm586-1.0-1/Bio-Emboss-1.0/blib/arch/
auto/Bio/Emboss/Emboss.bundle undefined reference to _ajAtomEnv1
expected to be defined in a dynamic image
<snip>
/sw/src/fink.build/bio-emboss-pm586-1.0-1/Bio-Emboss-1.0/blib/arch/
auto/Bio/Emboss/Emboss.bundle undefined reference to
_embXyzSeqsetNR expected to be defined in a dynamic image
/sw/src/fink.build/bio-emboss-pm586-1.0-1/Bio-Emboss-1.0/blib/arch/
auto/Bio/Emboss/Emboss.bundle undefined reference to
_embXyzSeqsetNRRange expected to be defined in a dynamic image
t/1....dubious
Test returned status 0 (wstat 5, 0x5)
DIED. FAILED tests 1-12
Failed 12/12 tests, 0.00% okay
Failed Test Stat Wstat Total Fail Failed List of Failed
----------------------------------------------------------------------
---------
t/1.t 0 5 12 24 200.00% 1-12
Failed 1/1 test scripts, 0.00% okay. 12/12 subtests failed, 0.00%
okay.
make: *** [test_dynamic] Error 2
### execution of make failed, exit code 2
Failed: phase compiling: bio-emboss-pm586-1.0-1 failed
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