Roy Mendelssohn wrote: > Hi All: > > I sent this once and got no reply. This failure is blocking me from > updating either HDF or netcdf, no certain which. If someone has a > solution, I would appreciate it. > > Info: > > Computer: Intel MacBook Pro with 2.2 Ghz Intel Core 2 Duo > > fink --version > Package manager version: 0.29.2 > Distribution version: selfupdate-rsync Mon May 4 13:09:21 2009, > 10.5, i386 > > gcc --version > i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5490) > > Error: > > >> Making all in java-math >> if /bin/sh ../../../libtool --tag=CC --mode=compile /sw/src/ >> fink.build/gcc44-4.4.0-1000/darwin_objdir/./gcc/xgcc -B/sw/src/ >> fink.build/gcc44-4.4.0-1000/darwin_objdir/./gcc/ -B/sw/lib/gcc4.4/ >> i686-apple-darwin9/bin/ -B/sw/lib/gcc4.4/i686-apple-darwin9/lib/ - >> isystem /sw/lib/gcc4.4/i686-apple-darwin9/include -isystem /sw/lib/ >> gcc4.4/i686-apple-darwin9/sys-include -DHAVE_CONFIG_H -I. - >> I../../../../../../../gcc-4.4.0/libjava/classpath/native/jni/java- >> math -I../../../include -I../../../../../../../gcc-4.4.0/libjava/ >> classpath/include -I../../../../../../../gcc-4.4.0/libjava/classpath/ >> native/jni/classpath -I../../../../../../../gcc-4.4.0/libjava/ >> classpath/native/jni/native-lib -I/sw/include -W -Wall -Wmissing- >> declarations -Wwrite-strings -Wmissing-prototypes -Wno-long-long -I/ >> usr/include -g -O2 -MT gnu_java_math_GMP.lo -MD -MP -MF ".deps/ >> gnu_java_math_GMP.Tpo" -c -o >> gnu_java_math_GMP.lo ../../../../../../../gcc-4.4.0/libjava/ >> classpath/native/jni/java-math/gnu_java_math_GMP.c; \ >> then mv -f ".deps/gnu_java_math_GMP.Tpo" ".deps/ >> gnu_java_math_GMP.Plo"; else rm -f ".deps/gnu_java_math_GMP.Tpo"; >> exit 1; fi >> libtool: compile: /sw/src/fink.build/gcc44-4.4.0-1000/ >> darwin_objdir/./gcc/xgcc -B/sw/src/fink.build/gcc44-4.4.0-1000/ >> darwin_objdir/./gcc/ -B/sw/lib/gcc4.4/i686-apple-darwin9/bin/ -B/sw/ >> lib/gcc4.4/i686-apple-darwin9/lib/ -isystem /sw/lib/gcc4.4/i686- >> apple-darwin9/include -isystem /sw/lib/gcc4.4/i686-apple-darwin9/sys- >> include -DHAVE_CONFIG_H -I. -I../../../../../../../gcc-4.4.0/libjava/ >> classpath/native/jni/java-math -I../../../include - >> I../../../../../../../gcc-4.4.0/libjava/classpath/include - >> I../../../../../../../gcc-4.4.0/libjava/classpath/native/jni/ >> classpath -I../../../../../../../gcc-4.4.0/libjava/classpath/native/ >> jni/native-lib -I/sw/include -W -Wall -Wmissing-declarations -Wwrite- >> strings -Wmissing-prototypes -Wno-long-long -I/usr/include -g -O2 - >> MT gnu_java_math_GMP.lo -MD -MP -MF .deps/gnu_java_math_GMP.Tpo - >> c ../../../../../../../gcc-4.4.0/libjava/classpath/native/jni/java- >> math/gnu_java_math_GMP.c -fno-common -DPIC -o .libs/ >> gnu_java_math_GMP.o >> /bin/sh ../../../libtool --tag=CC --mode=link /sw/src/fink.build/ >> gcc44-4.4.0-1000/darwin_objdir/./gcc/xgcc -B/sw/src/fink.build/ >> gcc44-4.4.0-1000/darwin_objdir/./gcc/ -B/sw/lib/gcc4.4/i686-apple- >> darwin9/bin/ -B/sw/lib/gcc4.4/i686-apple-darwin9/lib/ -isystem /sw/ >> lib/gcc4.4/i686-apple-darwin9/include -isystem /sw/lib/gcc4.4/i686- >> apple-darwin9/sys-include -W -Wall -Wmissing-declarations -Wwrite- >> strings -Wmissing-prototypes -Wno-long-long -I/usr/include -g -O2 >> -version-info 0:0:0 -no-undefined -lgmp -o libjavamath.la -rpath / >> sw/lib/gcc4.4/lib/gcj-4.4.0-10 -version-info 0:0:0 -no-undefined - >> lgmp -avoid-version gnu_java_math_GMP.lo ../../../native/jni/ >> classpath/jcl.lo >> libtool: link: /sw/src/fink.build/gcc44-4.4.0-1000/darwin_objdir/./ >> gcc/xgcc -B/sw/src/fink.build/gcc44-4.4.0-1000/darwin_objdir/./gcc/ - >> B/sw/lib/gcc4.4/i686-apple-darwin9/bin/ -B/sw/lib/gcc4.4/i686-apple- >> darwin9/lib/ -isystem /sw/lib/gcc4.4/i686-apple-darwin9/include - >> isystem /sw/lib/gcc4.4/i686-apple-darwin9/sys-include -dynamiclib - >> o .libs/libjavamath.dylib .libs/gnu_java_math_GMP.o ../../../native/ >> jni/classpath/.libs/jcl.o /usr/local/lib/libgmp.a - >> install_name /sw/lib/gcc4.4/lib/gcj-4.4.0-10/libjavamath.dylib - >> Wl,-single_module >> ld warning: codegen in ___gmpn_popcount (offset 0x00000007) prevents >> image from loading in dyld shared cache >> ld warning: codegen in ___gmpn_popcount (offset 0x0000000E) prevents >> image from loading in dyld shared cache >> ld warning: codegen in ___gmpn_popcount (offset 0x00000015) prevents >> image from loading in dyld shared cache >> ld: absolute addressing (perhaps -mdynamic-no-pic) used in >> ___gmpn_add_n from /usr/local/lib/libgmp.a(add_n.o) not allowed in >> slidable image. Use '-read_only_relocs suppress' to enable text relocs >> collect2: ld returned 1 exit status >> make[6]: *** [libjavamath.la] Error 1 >> make[5]: *** [all-recursive] Error 1 >> make[4]: *** [all-recursive] Error 1 >> make[3]: *** [all-recursive] Error 1 >> make[2]: *** [all-recursive] Error 1 >> make[1]: *** [all-target-libjava] Error 2 >> make: *** [all] Error 2 >> ### execution of /var/tmp/tmp.1.zzBkye failed, exit code 2 >> Removing runtime build-lock... >> Removing build-lock package... >> /sw/bin/dpkg-lockwait -r fink-buildlock-gcc44-4.4.0-1000 >> (Reading database ... 110047 files and directories currently >> installed.) >> Removing fink-buildlock-gcc44-4.4.0-1000 ... >> Failed: phase compiling: gcc44-4.4.0-1000 failed >> > > Thanks, > > -Roy M. > > ********************** > "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > ********************** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > 1352 Lighthouse Avenue > Pacific Grove, CA 93950-2097 > > e-mail: [email protected] (Note new e-mail address) > voice: (831)-648-9029 > fax: (831)-648-8440 > www: http://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > "From those who have been given much, much will be expected" > > Possibly the reply got blocked? I'm showing the following reply from Martin C:
http://article.gmane.org/gmane.os.macosx.fink.user/28551 In any case: it looks like you're getting interference from a non-fink gmp in /usr/local; so our usual protocol is to advise moving that out of the way while you build. There's also an unofficial repository that has a binary for gcc44, accessible via adding the following to your /sw/etc/apt/sources.list: deb http://sage.ucsc.edu/fink_intel_10.5_only stable main crypto deb http://sage.ucsc.edu/fink_intel_10.5_only unstable main crypto -- Alexander Hansen Fink User Liaison ------------------------------------------------------------------------------ The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your production scanning environment may not be a perfect world - but thanks to Kodak, there's a perfect scanner to get the job done! With the NEW KODAK i700 Series Scanner you'll get full speed at 300 dpi even with all image processing features enabled. http://p.sf.net/sfu/kodak-com _______________________________________________ Fink-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/fink-users
