Dear William,
My system is Mac OSX 10.5.7 with Fink 64 bits updated and I use
zsh-templates from svn.
I am trying:
fink install apbs, and it fails with:
[snip]
/bin/rm -rf /sw/src/fink.build/root-apbs-1.1.0-2
/bin/mkdir -p /sw/src/fink.build/root-apbs-1.1.0-2/sw
/bin/mkdir -p /sw/src/fink.build/root-apbs-1.1.0-2/DEBIAN
/usr/sbin/chown -R root:admin /sw/src/fink.build/root-apbs-1.1.0-2
/var/tmp/tmp.2.h0L77s
#################################################
#################################################
# #
# /etc/zshenv #
# #
#################################################
#################################################
# File: /etc/zshenv
# Version: 2.0.0
###############################################################################
# Created by William G. Scott on January 2, 2009.
# Copyright (c) . All rights reserved.
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
02110-1301
# USA
#
# cf. URL: http://www.fsf.org/licensing/licenses/gpl.html
#
##############################################################################
##############################################################################
###################### Define the minimal $PATH
###################
##############################################################################
# This file is always read, even with zsh -f .
# Therefore this file should contain only directives that cannot be over-
# ridden with zsh -f
#
# Uncomment for debug
# print "reading /etc/zshenv with $0"
#
# Create the minimal $PATH and $MANPATH assignments:
if [[ -x /usr/libexec/path_helper ]]; then
eval $(/usr/libexec/path_helper -s)
fi
##############################################################################
##############################################################################
######################## Define $ZDOT
########################
##############################################################################
# Uncomment to assign $ZDOT as appropriate
# ZDOT="/Library/init/zsh" ; export ZDOT
# otherwise, use the following assignment:
if [[ -z $ZDOT && -d "/Library/init/zsh" ]]; then
ZDOT="/Library/init/zsh" ; export ZDOT
elif [[ -z $ZDOT && -d "$HOME/Library/init/zsh" ]]; then
ZDOT="$HOME/Library/init/zsh" ; export ZDOT
elif [[ -d "/etc/zsh/init/zsh" ]]; then
ZDOT="/etc/zsh/init/zsh" ; export ZDOT
fi
##############################################################################
##############################################################################
######################### zshenv.d
##########################
##############################################################################
# Put any additional directives for the systemwide zshenv in files within
# ${ZDOT}/zshenv.d
# See ${ZDOT}/zshenv.d/README for additional information. In general, you
# shouldn't need to add in anything.
if [[ -d "${ZDOT}/zshenv.d" ]]; then
foreach file in $(command ls ${ZDOT}/zshenv.d/* | grep -v disabled |
grep -v README )
source $file
end
fi
##############################################################################
# The user's own directives can be put into ~/.zshenv
#!/bin/zsh -efv
make install DESTDIR=/sw/src/fink.build/root-apbs-1.1.0-2
Making install in contrib
Making install in maloc
Making install in src
Making install in base
Making install in .
cp -p ../../src/base/maloc/*.h ../aaa_inc/maloc/.
make[6]: Nothing to be done for `install-exec-am'.
make[6]: Nothing to be done for `install-data-am'.
Making install in vsys
Making install in .
cp -p ../../src/vsys/maloc/*.h ../aaa_inc/maloc/.
make[6]: Nothing to be done for `install-exec-am'.
make[6]: Nothing to be done for `install-data-am'.
Making install in vsh
Making install in .
cp -p ../../src/vsh/maloc/*.h ../aaa_inc/maloc/.
make[6]: Nothing to be done for `install-exec-am'.
make[6]: Nothing to be done for `install-data-am'.
Making install in psh
Making install in .
cp -p ../../src/psh/maloc/*.h ../aaa_inc/maloc/.
make[6]: Nothing to be done for `install-exec-am'.
make[6]: Nothing to be done for `install-data-am'.
Making install in aaa_inc
Making install in maloc
Making install in .
make[7]: Nothing to be done for `install-exec-am'.
test -z
"/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc" ||
mkdir -p -- .
"/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc"
/sw/bin/ginstall -c -m 644 'maloc.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/maloc.h'
/sw/bin/ginstall -c -m 644 'maloc_base.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/maloc_base.h'
/sw/bin/ginstall -c -m 644 'vsys.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/vsys.h'
/sw/bin/ginstall -c -m 644 'vio.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/vio.h'
/sw/bin/ginstall -c -m 644 'vmem.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/vmem.h'
/sw/bin/ginstall -c -m 644 'vnm.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/vnm.h'
/sw/bin/ginstall -c -m 644 'vset.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/vset.h'
/sw/bin/ginstall -c -m 644 'vsh.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/vsh.h'
/sw/bin/ginstall -c -m 644 'psh.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/psh.h'
/sw/bin/ginstall -c -m 644 'vmp.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/vmp.h'
/sw/bin/ginstall -c -m 644 'vcom.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/vcom.h'
/sw/bin/ginstall -c -m 644 'vmpi.h'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/include/maloc/vmpi.h'
Making install in .
make[6]: Nothing to be done for `install-exec-am'.
make[6]: Nothing to be done for `install-data-am'.
Making install in aaa_lib
Making install in .
test -z "/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/lib/" ||
mkdir -p -- .
"/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/lib/"
/bin/sh ../../libtool --mode=install /sw/bin/ginstall -c 'libmaloc.la'
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/lib//
libmaloc.la'
/sw/bin/ginstall -c .libs/libmaloc.lai
/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/lib//
libmaloc.la
/sw/bin/ginstall -c .libs/libmaloc.a
/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/lib//libmaloc.a
chmod 644
/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/lib//libmaloc.a
ranlib
/sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/lib//libmaloc.a
libtool: install: warning: remember to run `libtool --finish
/sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/lib/'
make[6]: Nothing to be done for `install-data-am'.
Making install in .
make[5]: Nothing to be done for `install-exec-am'.
make[5]: Nothing to be done for `install-data-am'.
Making install in .
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in pmgZ
Making install in .
cp -p ../../src/mg/apbs/*.h ../../src/aaa_inc/apbs/.
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in aqua
Making install in .
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in opal
Making install in ZSI
Making install in .
make[5]: Nothing to be done for `install-exec-am'.
mkdir -p @INSTALL_DIR68545{prefix}/lib/python2.6/site-packages
/sw/bin/python2.6 setup.py install
--prefix=/sw/src/fink.build/root-apbs-1.1.0-2/sw
running install
Checking .pth file support in
/sw/src/fink.build/root-apbs-1.1.0-2/sw/lib/python2.6/site-packages/
error: can't create or remove files in install directory
The following error occurred while trying to add or remove files in the
installation directory:
[Errno 2] No such file or directory:
'/sw/src/fink.build/root-apbs-1.1.0-2/sw/lib/python2.6/site-packages/test-easy-install-90234.pth'
The installation directory you specified (via --install-dir, --prefix, or
the distutils default setting) was:
/sw/src/fink.build/root-apbs-1.1.0-2/sw/lib/python2.6/site-packages/
This directory does not currently exist. Please create it and try again, or
choose a different installation directory (using the -d or --install-dir
option).
make[5]: *** [install-data-local] Error 1
make[4]: *** [install-am] Error 2
make[3]: *** [install-recursive] Error 1
make[2]: *** [install-recursive] Error 1
make[1]: *** [install-recursive] Error 1
make: *** [install-recursive] Error 1
### execution of /var/tmp/tmp.2.h0L77s failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-apbs-1.1.0-2
(Reading database ... 123610 files and directories currently installed.)
Removing fink-buildlock-apbs-1.1.0-2 ...
Failed: phase installing: apbs-1.1.0-2 failed
I hope you can help me to solve this issue.
Thanks in advance,
Alan
--
Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
Department of Biochemistry, University of Cambridge.
80 Tennis Court Road, Cambridge CB2 1GA, UK.
>>http://www.bio.cam.ac.uk/~awd28<<
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