Alexander Hansen wrote:
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> On 6/7/10 10:49 AM, Robert Wyatt wrote:
>> On 10.6.3 64-bit, I have the following error while updating coot. Happy
>> to try suggestions.  --Robert
>>
>> checking for GtkGLExt - version>= 1.0.0... no
>> *** Could not run GtkGLExt test program, checking why...
>> *** The test program compiled, but did not run. This usually means
>> *** that the run-time linker is not finding GtkGLExt or finding the wrong
>> *** version of GtkGLExt. If it is not finding GtkGLExt, you'll need to
>> set your
>> *** LD_LIBRARY_PATH environment variable, or edit /etc/ld.so.conf to point
>> *** to the installed location  Also, make sure you have run ldconfig if that
>> *** is required on your system
>> ***
>> *** If you have an old version installed, it is best to remove it, although
>> *** you may also be able to get things to work by modifying LD_LIBRARY_PATH
>> ### execution of /var/tmp/tmp.1.Ktedkp failed, exit code 1
>> Removing runtime build-lock...
>> Removing build-lock package...
>> /sw/bin/dpkg-lockwait -r fink-buildlock-coot-0.6.2-pre-1-8
>> (Reading database ... 371262 files and directories currently installed.)
>> Removing fink-buildlock-coot-0.6.2-pre-1-8 ...
>> Failed: phase compiling: coot-0.6.2-pre-1-8 failed
>>
>> Before reporting any errors, please run "fink selfupdate" and
>> try again.  If you continue to have issues, please check to see if the
>> FAQ on fink's website solves the problem.  If not, ask on the fink-users
>> or fink-beginners mailing lists, with a carbon copy to the maintainer:
>>
>>      W. G. Scott<[email protected]>
>>
>> Note that this is preferable to emailing the maintainer directly, since
>> most fink package maintainers do not have access to all possible
>> hardware and software configurations.
>>
>>
>> bash-4.0$ fink list gtkglext
>> Information about 10431 packages read in 4 seconds.
>>    i   gtkglext1                            1.0.6-1013
>> OpenGL Extension to GTK
>>    i   gtkglext1-shlibs                     1.0.6-1013
>> OpenGL Extension to GTK
>>        gtkglextmm                           1.2.0-1003
>> C++ wrapper for GtkGLExt
>>        gtkglextmm-shlibs                    1.2.0-1003
>> C++ wrapper for GtkGLExt
>>
>
> Is there a config.log in the coot build directory which might illuminate
> why the test program can't be run?
>
> - --
> Alexander Hansen
> Fink User Liaison
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Here we are Alex:
http://robertwyatt.info/fink/coot-config.txt

[from cat /sw/src/fink.build/coot-0.6.2-pre-1-5/coot-0.6.2-pre-1/config.log]

I guess it was hiding in plain sight (I ran sudo 
/usr/libexec/locate.updatedb and it showed up).

Is this what we're looking for?

configure:21535: checking for GtkGLExt - version >= 1.0.0
configure:21659: gcc -o conftest -g -O2 -I/sw/include/pango-1.0 
-I/sw/lib/fontconfig2/include -I/sw/include/freetype2 -I/sw/include 
-I/sw/include/gtkglext-1.0 -I/sw/lib/gtkglext-1.0/include 
-I/sw/include/gtk-2.0 -I/sw/lib/gtk-2.0/include -I/sw/include/glib-2.0 
-I/sw/lib/glib-2.0/include -I/sw/include/cairo -I/sw/include/atk-1.0 
-I/usr/X11R6/include -I/usr/X11/include -I/sw/include/libglade-2.0/glade 
-I/sw/include/libglade-2.0 -I/sw/include/python2.6  -I/sw/include/mmdb 
-I/sw/include/ssm -I/sw/include/gpp4/ccp4 -I/sw/include/clipper 
-I/sw/include -I/usr/X11R6/include 
-Wl,-dylib_file,/sw/lib/python2.6/config/libpython2.6.dylib:/sw/lib/libsfftw.2.0.7.dylib:/sw/lib/libsrfftw.2.0.7.dylib:/sw/lib/pango-ft219/lib/libpango-1.0.dylib:/sw/lib/pango-ft219/lib/libpangocairo-1.0.dylib:/sw/lib/pango-ft219/lib/libpangoft2-1.0.dylib:/sw/lib/pango-ft219/lib/libpangox-1.0.dylib:/sw/lib/pango-ft219/lib/libpangoxft-1.0.dylib
 
-L/sw/lib/pango-ft219/lib -L/sw/lib -L/sw/lib/gcc4.4/lib -L/usr/lib 
-lSystemStubs -flat_namespace 
-L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries 
conftest.c -L/sw/lib -L/sw/lib/fontconfig2/lib -L/usr/X11R6/lib 
-R/usr/X11R6/lib -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu 
-lXt -lSM -lICE -lgtk-x11-2.0 -lpangox-1.0 -lX11 -lgdk-x11-2.0 -latk-1.0 
-lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo 
-lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 
-lglib-2.0 -lintl  >&5
ld warning: duplicate dylib /sw/lib/gcc4.4/lib/libgcc_s.1.dylib
configure:21662: $? = 0
configure:21664: ./conftest
dyld: Library not loaded: /usr/X11/lib/libX11.6.dylib
   Referenced from: /sw/lib/libgtkglext-x11-1.0.0.dylib
   Reason: Incompatible library version: libgtkglext-x11-1.0.0.dylib 
requires version 10.0.0 or later, but libX11.6.dylib provides version 9.0.0
./configure: line 21665: 79274 Trace/BPT trap          ./conftest$ac_exeext

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