Hi Alexander,
PS...
I can download the clustalw source files from the ebi location manually, just
not through fink.
Is there a way to use the manually downloaded file through fink?
All the best,
--Buz
On Nov 5, 2010, at 3:24 PM, Buz Barstow wrote:
> Hi Alexander,
>
> Thanks for getting back to me earlier.
>
> I just ran a selfupdate on fink, and the download location for clustalw has
> changed from
>
> ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalW/clustalw1.83.UNIX.tar.gz
>
> to:
>
> ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/clustalw1.83.UNIX.tar.gz
>
> Unfortunately, this mirror also isn't responding.
>
> Is there a way to fix this?
>
> Thanks! and all the best,
> --Buz
>
>
>
> On Nov 5, 2010, at 2:13 PM, Alexander Hansen wrote:
>
>> -----BEGIN PGP SIGNED MESSAGE-----
>> Hash: SHA1
>>
>> On 11/5/10 10:45 AM, Buz Barstow wrote:
>>> Dear All,
>>>
>>> I'm trying to install biopython-py26 onto Snow Leopard (MacOSX 10.6.4), but
>>> I can't instal one of the dependencies (clustalw) as the server that hosts
>>> the program is non-responsive. Here's some output from the command:
>>>
>>> buz:~ bb75$ fink install biopython-py26
>>> Password:
>>> Information about 9775 packages read in 1 seconds.
>>> The following package will be installed or updated:
>>> biopython-py26
>>> The following 8 additional packages will be installed:
>>> clustalw flex lcms lcms-shlibs libjpeg pil-py26 reportlab-py26 wise2
>>> Do you want to continue? [Y/n] Y
>>> curl --connect-timeout 30 -f -L -A 'fink/0.29.15' -P - -O
>>> ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalW/clustalw1.83.UNIX.tar.gz
>>> % Total % Received % Xferd Average Speed Time Time Time
>>> Current
>>> Dload Upload Total Spent Left Speed
>>> 0 0 0 0 0 0 0 0 --:--:-- 0:00:01 --:--:-- >>> 0
>>> curl: (19) RETR response: 425
>>> ### execution of curl failed, exit code 19
>>> Downloading the file "clustalw1.83.UNIX.tar.gz" failed.
>>>
>>> (1) Give up
>>> (2) Retry the same mirror
>>>
>>> Default answer will be chosen in 120 seconds...
>>> How do you want to proceed? [2]
>>>
>>>
>>> Could anyone suggest a workaround?
>>>
>>> Thanks! and all the best,
>>>
>>> --Buz
>>>
>>>
>>>
>>>
>>>
>>
>> It's fixed in CVS now--the change should show up via selfupdate in about
>> an hour, more or less.
>>
>> - --
>> Alexander Hansen, Ph.D.
>> Fink User Liaison
>> -----BEGIN PGP SIGNATURE-----
>> Version: GnuPG v1.4.10 (Darwin)
>> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
>>
>> iEYEARECAAYFAkzUSS8ACgkQB8UpO3rKjQ8W5ACfVWwQ/2h7p2cFXPeP5+C34Qld
>> 8WEAnjrbTprzwGA3AZM/rOGydnTJTMnM
>> =KskF
>> -----END PGP SIGNATURE-----
>
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