Hello,
I'm having trouble installing scipy-py27. I'm running OSX 10.6.5, and have
tried a "self-update". I have the 32-bit compatibility mode version of fink
installed, but am considering switching over to full 64bit version.
Below is the error message I receive. Any suggestions would be appreciated.
Gratefully,
-- Shaun
-------------------------------
fink install scipy-py27
Information about 9842 packages read in 1 seconds.
The following package will be installed or updated:
scipy-py27
Setting runtime build-lock...
dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-scipy-py27-0.8.0-1
/sw/src/fink.build
dpkg-deb: building package `fink-buildlock-scipy-py27-0.8.0-1' in
`/sw/src/fink.build/fink-buildlock-scipy-py27-0.8.0-1_2010.12.05-23.07.25_darwin-i386.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i
/sw/src/fink.build/fink-buildlock-scipy-py27-0.8.0-1_2010.12.05-23.07.25_darwin-i386.deb
Selecting previously deselected package fink-buildlock-scipy-py27-0.8.0-1.
(Reading database ... 201792 files and directories currently installed.)
Unpacking fink-buildlock-scipy-py27-0.8.0-1 (from
.../fink-buildlock-scipy-py27-0.8.0-1_2010.12.05-23.07.25_darwin-i386.deb) ...
Setting up fink-buildlock-scipy-py27-0.8.0-1 (2010.12.05-23.07.25) ...
gzip -dc /sw/src/scipy-0.8.0.tar.gz | /sw/bin/tar -xf - --no-same-owner
--no-same-permissions
sed -i.bak -e 's,<umfpack,</sw/include/suitesparse/umfpack,'
scipy/sparse/linalg/dsolve/umfpack/umfpack.i
/var/tmp/tmp.1.rPyCai
#!/bin/sh -ev
unset LDFLAGS
/sw/bin/python2.7 setup.py build --fcompiler=gnu95
Warning: No configuration returned, assuming unavailable.blas_opt_info:
FOUND:
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3)]
extra_compile_args = ['-msse3',
'-I/System/Library/Frameworks/vecLib.framework/Headers']
lapack_opt_info:
FOUND:
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3)]
extra_compile_args = ['-msse3']
umfpack_info:
libraries umfpack not found in /usr/local/lib
libraries umfpack not found in /usr/lib
libraries umfpack not found in /opt/local/lib
amd_info:
libraries amd not found in /usr/local/lib
libraries amd not found in /usr/lib
libraries amd not found in /opt/local/lib
FOUND:
libraries = ['amd']
library_dirs = ['/sw/lib']
FOUND:
libraries = ['umfpack', 'amd']
library_dirs = ['/sw/lib']
Traceback (most recent call last):
File "setup.py", line 160, in <module>
setup_package()
File "setup.py", line 152, in setup_package
configuration=configuration )
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/core.py",
line 152, in setup
config = configuration()
File "setup.py", line 118, in configuration
config.add_subpackage('scipy')
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
line 972, in add_subpackage
caller_level = 2)
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
line 941, in get_subpackage
caller_level = caller_level + 1)
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
line 878, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 20, in configuration
config.add_subpackage('special')
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
line 972, in add_subpackage
caller_level = 2)
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
line 941, in get_subpackage
caller_level = caller_level + 1)
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
line 878, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/special/setup.py", line 54, in configuration
extra_info=get_info("npymath")
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
line 2092, in get_info
pkg_info = get_pkg_info(pkgname, dirs)
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
line 2044, in get_pkg_info
return read_config(pkgname, dirs)
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/npy_pkg_config.py",
line 384, in read_config
v = _read_config_imp(pkg_to_filename(pkgname), dirs)
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/npy_pkg_config.py",
line 320, in _read_config_imp
meta, vars, sections, reqs = _read_config(filenames)
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/npy_pkg_config.py",
line 304, in _read_config
meta, vars, sections, reqs = parse_config(f, dirs)
File
"/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/npy_pkg_config.py",
line 276, in parse_config
raise PkgNotFound("Could not find file(s) %s" % str(filenames))
numpy.distutils.npy_pkg_config.PkgNotFound: Could not find file(s)
['/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/core/lib/npy-pkg-config/npymath.ini']
### execution of /var/tmp/tmp.1.rPyCai failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-scipy-py27-0.8.0-1
(Reading database ... 201793 files and directories currently installed.)
Removing fink-buildlock-scipy-py27-0.8.0-1 ...
Failed: phase compiling: scipy-py27-0.8.0-1 failed
------------------------------------------------------------------------------
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