On Tue, Apr 19, 2011 at 1:12 PM, Alexander Hansen <
[email protected]> wrote:
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> On 4/19/11 1:08 PM, Yogesh Gupta wrote:
> > Thanks Alexander for your reply.
> >
> >
> > On Tue, Apr 19, 2011 at 12:55 PM, Alexander Hansen
> > <[email protected] <mailto:[email protected]>>
> wrote:
> >
> > On 4/19/11 12:32 PM, Yogesh Gupta wrote:
> >> Hello,
> >
> >> I am trying to run a python based program on MacOSX, which needs
> >> following packages
> >
> >> numpy
> >> PIL
> >> matplotlib
> >
> >
> > 1) How about posting the results of "fink list -it numpy pil
> > matplotlib" ?
> >
> >> Here is the result of "fink list -it numpy pil matplotlib"
> >> $ fink list -it numpy pil matplotlib
> >> Information about 9910 packages read in 1 seconds.
> >> i gcc44-compiler 4.4.4-1000 Compiler Binaries for gcc44.
> >> i matplotlib-py25 1.0.0-1 Pure python 2D plotting with a
> >> Matlab syntax
> >> i numpy-py25 1.5.1-1 N-dimensional array package for Python
> >> i numpy-py26 1.5.1-1 N-dimensional array package for Python
> >> i numpy-py27 1.5.1-1 N-dimensional array package for Python
> >> p pil [virtual package]
> >> i pil-py25 1.1.7-1 Python Imaging Library
> >> i pil-py26 1.1.7-1 Python Imaging Library
> >
> >
> >
> 2) If you've only installed the above for python25 they will only work
> > with Fink's python25. They will not work with any other Fink Python
> > version, nor with the system's Python, nor with any extra third-party
> > Pythons you have installed (though I'm not completely sure if they
> > couldn't be modified to work with an external Python of identical
> > version).
> >
> >> I can successfully import all 3 using python2.5 (only using
> >> /sw64/bin/python or /sw64/bin/python2.5) , although i have
> > python2.6 and
> >> 2.7 installed. I get following error when in run executable:
> >
> >> *"Fatal Python error: Interpreter not initialized (version mismatch?)
> >> Abort trap*"
> >
> > 3) What is this executable? A Python script?
> >
> >> Yes it is a python script.
> >
> > 4) If it's a script, what Python interpreter is it expecting? This may
> > be indicated an initial line.
> >
> >> The first line of this script says:
> >> #!/sw64/bin/python2.5
> >
> > 5) How are you running it? If it's a script, you might be able to get
> > it to work just by using "/sw64/bin/python <name of script>"
> >
> >> I just tried this way but got the same Fatal Python error (version
> >> mismatch)
> >
> >
> >> Seems like a correct python version needs to be defined somewhere,
> > that
> >> i am unable to find.
> >
> > 6) Fink's python packages are internally consistent about where to find
> > their modules. If your executable is calling non-Fink modules, or a
> > non-Fink interpreter, that's probably the source of this.
> >
> >
> >> Some details about location of various pythons are as follows (i have
> >> not specified a python path in my .bashrc or .bash_profile):
> >
> >> *$which python*
> >> /sw64/bin/python
> >
> >> *$ ls -ltr /sw64/bin/python**
> >> -rwxr-xr-x 1 root admin 1763200 Apr 14 19:45 /sw64/bin/python2.5
> >> -rwxr-xr-x 1 root admin 1419 Apr 14 19:45
> > /sw64/bin/python2.5-config
> >> -rwxr-xr-x 1 root admin 8984 Apr 14 19:47 /sw64/bin/python2.6
> >> -rwxr-xr-x 1 root admin 1366 Apr 14 19:47
> > /sw64/bin/python2.6-config
> >> -rwxr-xr-x 1 root admin 8984 Apr 14 19:49 /sw64/bin/python2.7
> >> -rwxr-xr-x 1 root admin 1550 Apr 14 19:50
> > /sw64/bin/python2.7-config
> >> lrwxr-xr-x 1 root admin 9 Apr 15 18:17 /sw64/bin/python ->
> >> python2.5
> >> lrwxr-xr-x 1 root admin 16 Apr 15 18:17
> > /sw64/bin/python-config
> >> -> python2.5-config
> >
> >> *$ls -ltr /System/Library/Frameworks/Python.framework/Versions*
> >> drwxr-xr-x 8 root wheel 272 Jun 7 2010 2.3
> >> drwxr-xr-x 12 root wheel 408 Nov 30 13:46 2.5
> >> drwxr-xr-x 12 root wheel 408 Nov 30 13:46 2.6
> >> lrwxr-xr-x 1 root wheel 3 Apr 19 11:20 Current -> 2.5
> >
> >> *$ls -ltr /usr/bin/python**
> >> -rwxr-xr-x 5 root wheel 925 Jul 9 2009 /usr/bin/python-config
> >> lrwxr-xr-x 1 root wheel 76 Jun 7 2010 /usr/bin/pythonw2.6 ->
> >> ../../System/Library/
> >> Frameworks/Python.framework/Versions/2.6/bin/pythonw2.6
> >> lrwxr-xr-x 1 root wheel 76 Jun 7 2010 /usr/bin/pythonw2.5 ->
> >
> >
> ../../System/Library/Frameworks/Python.framework/Versions/2.5/bin/pythonw2.5
> >> lrwxr-xr-x 1 root wheel 82 Jun 7 2010
> > /usr/bin/python2.6-config
> >> ->
> >
> >
> ../../System/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6-config
> >> lrwxr-xr-x 1 root wheel 75 Jun 7 2010 /usr/bin/python2.6 ->
> >
> >
> ../../System/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6
> >> lrwxr-xr-x 1 root wheel 82 Jun 7 2010
> > /usr/bin/python2.5-config
> >> ->
> >
> >
> ../../System/Library/Frameworks/Python.framework/Versions/2.5/bin/python2.5-config
> >> lrwxr-xr-x 1 root wheel 75 Jun 7 2010 /usr/bin/python2.5 ->
> >
> >
> ../../System/Library/Frameworks/Python.framework/Versions/2.5/bin/python2.5
> >> -rwxr-xr-x 2 root wheel 86000 Jun 25 2010 /usr/bin/pythonw
> >> -rwxr-xr-x 2 root wheel 86000 Jun 25 2010 /usr/bin/python
> >
> >
> >> Could someone point me to a solution?
> >
> >> Thanks so much for your time.
> >
> >> Yogesh
> >
> >
> >
> >
> > See points 1-6 above.
> >
>
> > --
> > --------------------------------------------------
> > Yogesh K. Gupta, Ph.D.
> > Dept of Structural & Chemical Biology
> > Mount Sinai School of Medicine
> > Icahn Medical Institute
> > 1 Gustave L. Levy Place, Box 1677
> > New York, NY, USA 10029
>
> > Tel:+1 212-659-8639
> > --------------------------------------------------
>
>
> Can we see the full output from an attempt to run your executable?
>
This is all i get when i run this disp.py script either with ./ or the
python that is specified on the first line of this script:
$ ./disp.py lysb_buf-2.90s
Fatal Python error: Interpreter not initialized (version mismatch?)
Abort trap
> - --
> Alexander Hansen, Ph.D.
> Fink User Liaison
> http://finkakh.wordpress.com/
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