On 3/28/12 10:58 AM, Roy Mendelssohn wrote: > On Mar 28, 2012, at 10:53 AM, Alexander Hansen wrote: > >> On 3/28/12 10:40 AM, Alexander Hansen wrote: >>> On 3/28/12 10:10 AM, Roy Mendelssohn wrote: >>>> Hi All: >>>> >>>> In trying to build mayavi, I ran into problems with building vtk58. >>>> I tried installing vtk58 separately, and it just hangs - I can't >>>> really give you the error message, just the point where it hangs - >>>> and doesn't budge. >>>> >>>> Basic info - OS X 10.7.3. Have the latest XCode that was just released. >>>> >>>> cc --version >>>> Apple clang version 3.1 (tags/Apple/clang-318.0.54) (based on LLVM >>>> 3.1svn) >>>> Target: x86_64-apple-darwin11.3.0 >>>> Thread model: posix >>>> >>>> gcc --version >>>> i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. >>>> build 5658) (LLVM build 2336.9.00) >>>> Copyright (C) 2007 Free Software Foundation, Inc. >>>> This is free software; see the source for copying conditions. There >>>> is NO >>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >>>> PURPOSE. >>>> >>>> fink --version >>>> Package manager version: 0.32.4.1 >>>> Distribution version: selfupdate-rsync Wed Mar 28 10:05:54 2012, >>>> 10.7, x86_64 >>>> Trees: local/main stable/main >>>> >>>> Copyright (c) 2001 Christoph Pfisterer >>>> Copyright (c) 2001-2012 The Fink Package Manager Team >>>> This program is distributed in the hope that it will be useful, >>>> but WITHOUT ANY WARRANTY; without even the implied warranty of >>>> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the >>>> GNU General Public License for more details. >>>> >>>> Below is the output leading up to where it hangs - the last line is >>>> where (it doesn't move from 84%). >>>> >>>> Thanks for any help. >>>> >>>> -Roy M. >>>> >>>> >>>> 1 warning generated. >>>> Linking CXX shared library ../bin/libvtkChartsTCL.dylib >>>> cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Charts&& /sw/bin/cmake >>>> -E cmake_link_script CMakeFiles/vtkChartsTCL.dir/link.txt --verbose=1 >>>> /sw/var/lib/fink/path-prefix-clang/c++ -g -dynamiclib >>>> -Wl,-headerpad_max_install_names -L/sw/lib -compatibility_version >>>> 5.8.0 -current_version 5.8.0 -o ../bin/libvtkChartsTCL.5.8.0.dylib >>>> -install_name /sw/lib/vtk58/libvtkChartsTCL.5.8.dylib >>>> CMakeFiles/vtkChartsTCL.dir/vtkAbstractContextItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkAxisTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkBlockItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkBrushTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkChartTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkChartLegendTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkChartHistogram2DTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkChartParallelCoordinatesTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkChartXYTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkChartPieTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkColorLegendTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotPieTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkColorSeriesTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkColorTransferFunctionItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkColorTransferControlPointsItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkCompositeControlPointsItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkCompositeTransferFunctionItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkContext2DTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkContextActorTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkContextClipTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkContextDevice2DTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkContextInteractorStyleTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkContextItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkContextMapper2DTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkContextSceneTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkContextTransformTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkContextViewTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkControlPointsItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkImageItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkLookupTableItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPenTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPiecewiseControlPointsItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPiecewiseFunctionItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotBarTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotGridTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotHistogram2DTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotLineTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotStackedTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotParallelCoordinatesTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotPointsTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkScalarsToColorsItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkTooltipItemTcl.cxx.o >>>> CMakeFiles/vtkChartsTCL.dir/vtkChartsTCLInit.cxx.o >>>> ../bin/libvtkCharts.5.8.0.dylib ../bin/libvtkViewsTCL.5.8.0.dylib >>>> /sw/lib/libtk.dylib /sw/lib/libtcl.dylib -lm >>>> ../bin/libvtkViews.5.8.0.dylib ../bin/libvtkInfovisTCL.5.8.0.dylib >>>> ../bin/libvtkInfovis.5.8.0.dylib ../bin/libvtkWidgetsTCL.5.8.0.dylib >>>> ../bin/libvtkWidgets.5.8.0.dylib >>>> ../bin/libvtkVolumeRendering.5.8.0.dylib >>>> ../bin/libvtkHybridTCL.5.8.0.dylib >>>> ../bin/libvtkRenderingTCL.5.8.0.dylib /sw/lib/libtk.dylib >>>> ../bin/libvtkGraphicsTCL.5.8.0.dylib >>>> ../bin/libvtkImagingTCL.5.8.0.dylib /usr/X11R6/lib/libSM.dylib >>>> /usr/X11R6/lib/libICE.dylib /usr/X11R6/lib/libX11.dylib >>>> /usr/X11R6/lib/libXext.dylib ../bin/libvtkHybrid.5.8.0.dylib >>>> ../bin/libvtkParallel.5.8.0.dylib ../bin/libvtkRendering.5.8.0.dylib >>>> ../bin/libvtkGraphics.5.8.0.dylib ../bin/libvtkImaging.5.8.0.dylib >>>> ../bin/libvtkIOTCL.5.8.0.dylib ../bin/libvtkIO.5.8.0.dylib >>>> ../bin/libvtkFilteringTCL.5.8.0.dylib >>>> ../bin/libvtkFiltering.5.8.0.dylib ../bin/libvtkCommonTCL.5.8.0.dylib >>>> /sw/lib/libtcl.dylib -lm ../bin/libvtkCommon.5.8.0.dylib >>>> ../bin/libvtksys.5.8.0.dylib -lm >>>> cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Charts&& /sw/bin/cmake >>>> -E cmake_symlink_library ../bin/libvtkChartsTCL.5.8.0.dylib >>>> ../bin/libvtkChartsTCL.5.8.dylib ../bin/libvtkChartsTCL.dylib >>>> /sw/bin/cmake -E cmake_progress_report >>>> /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/CMakeFiles 6 >>>> [ 84%] Built target vtkChartsTCL >>>> >>>> >>>> >>> Unfortunately, I didn't reproduce the error--it failed at 7% rather >>> than 84% for me, without getting tuck: >>> >>> cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Common&& /sw/bin/cmake >>> -E touch >>> /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Common/vtkCommonHierarchy.target >>> /sw/bin/cmake -E cmake_progress_report >>> /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/CMakeFiles 7 >>> [ 7%] Built target vtkCommon >>> make: *** [all] Error 2 >>> <snip> >>> Package manager version: 0.32.4.1 >>> Distribution version: selfupdate-cvs Tue Mar 27 10:56:28 2012, 10.7, >>> x86_64 >>> Trees: local/main stable/main local/injected >>> Xcode: 4.3.2 >>> Max. Fink build jobs: 4 >>> >>> $ sysctl hw.model >>> hw.model: MacBookPro8,1 >>> >>> I'll try my own advice and change the number of build jobs next :-) . >>> I'll also cc the maintainer. >>> >> I found the following in the setup stage for the build: >> >> perl -pi.bak -e 's|/usr/local|/sw|g' Wrapping/Tcl/vtkbase/vtkbase.tcl >> Can't open Wrapping/Tcl/vtkbase/vtkbase.tcl: No such file or directory. >> >> tar -tvf /sw/src/vtk-5.8.0.tar.gz | grep vtkbase.tcl >> -rw-r--r-- kitware/kitware 3486 2011-08-24 06:37 >> VTK/Wrapping/Tcl/vtkbase/vtkbase.tcl.in >> >> I also found the _real_ error in my case, which is the same regardless >> of the number of build jobs (and much easier to find when setting the >> number of jobs to 1): >> >> Linking CXX shared library ../../../bin/libMapReduceMPI.dylib >> cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Utilities/mrmpi/src&& >> /sw/bin/cmake -E cmake_link_script CMakeFiles/MapReduceMPI.dir/link.txt >> --verbose=1 >> /sw/var/lib/fink/path-prefix-clang/c++ -g -dynamiclib >> -Wl,-headerpad_max_install_names -L/sw/lib -compatibility_version >> 5.8.0 -current_version 5.8.0 -o ../../../bin/libMapReduceMPI.5.8.0.dylib >> -install_name /sw/lib/vtk58/libMapReduceMPI.5.8.dylib >> CMakeFiles/MapReduceMPI.dir/mapreduce.cpp.o >> CMakeFiles/MapReduceMPI.dir/keyvalue.cpp.o >> CMakeFiles/MapReduceMPI.dir/keymultivalue.cpp.o >> CMakeFiles/MapReduceMPI.dir/irregular.cpp.o >> CMakeFiles/MapReduceMPI.dir/hash.cpp.o >> CMakeFiles/MapReduceMPI.dir/memory.cpp.o >> CMakeFiles/MapReduceMPI.dir/error.cpp.o >> ../../../bin/libmpistubs.5.8.0.dylib ../../../bin/libvtksys.5.8.0.dylib >> /sw/bin/cmake -E cmake_progress_report >> /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/CMakeFiles >> [ 5%] Undefined symbols for architecture x86_64: >> "_MPI_Type_contiguous", referenced from: >> MPI::Datatype::Create_contiguous(int) const in mapreduce.cpp.o >> ... >> >> I do have openmpi installed: >> >> $ fink list -it openmpi | cut -f1-3 >> i openmpi 1.5.4-1 >> i openmpi-ext-oct361 1.0.2-102 >> i openmpi-shlibs 1.5.4-1 >> >> vtk58 carries a BuildConflicts: openmpi-dev, but there's no openmpi-dev >> on Lion due to the use of a newer and differently-factored package >> scheme there: >> >> $ fink list openmpi-dev >> Information about 4592 packages read in 1 seconds. >> >> I'll try removing openmpi to see if I reproduce Roy's error at that >> point, and I'll follow up. >> > I do not have openmpi installed at all - so I did not hit that. Also you may > hit some conflicts with tetex-base and ghostscript, depending on what you > have installed and what you choose (or maybe that was from mayavi?) > > -Roy > > > Unfortunately, I wasn't able to reproduce the error. :-( The vtk58 build proceeded to completion for me on 1 CPU. I'll try again with 4 for completeness.
-- Alexander Hansen, Ph.D. Fink User Liaison http://finkakh.wordpress.com/2012/02/21/got-job/ ------------------------------------------------------------------------------ This SF email is sponsosred by: Try Windows Azure free for 90 days Click Here http://p.sf.net/sfu/sfd2d-msazure _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
