On 4/11/12 7:12 AM, Ralph Gebauer wrote: > Dear Fink team! > > I am trying to install the atlas libraries[atlas-3.9.11-12] on my iMac > (OSX 10.6.8). > > My fink installation is the following >> Package manager version: 0.32.5.5 >> Distribution version: selfupdate-rsync Wed Apr 11 11:33:52 2012, 10.6, i386 >> Trees: local/main stable/main stable/crypto unstable/main unstable/crypto >> Xcode: 3.2.6 >> Max. Fink build jobs: 4 > The error I'm encountering doesn't seem to be a compiler error, but a > test which is failed by the library. I copy below the output. > > I would be very grateful about any hint about how to proceed! > > Thanks a lot in advance! > > Ralph > > > > > gcc -DL2SIZE=4194304 -I/sw/src/fink.build/atlas-3.9.11-12/bld/include > -I/sw/src/fink.build/atlas-3.9.11-12/bld/../ATLAS//include > -I/sw/src/fink.build/atlas-3.9.11-12/bld/../ATLAS//include/contrib > -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX > -DATL_ARCH_UNKNOWNx86 -DATL_CPUMHZ=3600 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 > -DATL_GAS_x8632 -DATL_FULL_LAPACK -DATL_NCPU=4 -fPIC -O3 > -fomit-frame-pointer -mfpmath=387 -m32 -o xdcpsctst dcpsctest.o \ > ATL_dcpsc_stub.o dcpsc.o > /sw/src/fink.build/atlas-3.9.11-12/bld/lib/libtstatlas.a -lpthread -lm > /sw/src/fink.build/atlas-3.9.11-12/bld/bin/ATLrun.sh > /sw/src/fink.build/atlas-3.9.11-12/bld/tune/blas/level1 xdcpsctst -n 777 > -X 4 1 -1 2 -3 -Y 4 1 -1 3 -2 > ERROR: Y[238], correct=0.449648, computed=0.449648 > ERROR: Y[585], correct=-0.014062, computed=-0.014062 > ITST N alpha incX incY TEST > ====== ======== ======== ==== ==== ====== > 0 777 1.00 1 1 PASSED > 1 777 -1.00 1 1 PASSED > 2 777 0.90 1 1 PASSED > 3 777 1.00 1 -1 PASSED > 4 777 -1.00 1 -1 PASSED > 5 777 0.90 1 -1 PASSED > 6 777 1.00 1 3 PASSED > 7 777 -1.00 1 3 PASSED > 8 777 0.90 1 3 PASSED > 9 777 1.00 1 -2 PASSED > 10 777 -1.00 1 -2 PASSED > 11 777 0.90 1 -2 PASSED > 12 777 1.00 -1 1 PASSED > 13 777 -1.00 -1 1 PASSED > 14 777 0.90 -1 1 PASSED > 15 777 1.00 -1 -1 PASSED > 16 777 -1.00 -1 -1 PASSED > 17 777 0.90 -1 -1 PASSED > 18 777 1.00 -1 3 PASSED > 19 777 -1.00 -1 3 PASSED > 20 777 0.90 -1 3 FAILED > 21 777 1.00 -1 -2 PASSED > 22 777 -1.00 -1 -2 PASSED > 23 777 0.90 -1 -2 PASSED > 24 777 1.00 2 1 PASSED > 25 777 -1.00 2 1 PASSED > 26 777 0.90 2 1 PASSED > 27 777 1.00 2 -1 PASSED > 28 777 -1.00 2 -1 PASSED > 29 777 0.90 2 -1 PASSED > 30 777 1.00 2 3 PASSED > 31 777 -1.00 2 3 PASSED > 32 777 0.90 2 3 PASSED > 33 777 1.00 2 -2 PASSED > 34 777 -1.00 2 -2 PASSED > 35 777 0.90 2 -2 PASSED > 36 777 1.00 -3 1 PASSED > 37 777 -1.00 -3 1 PASSED > 38 777 0.90 -3 1 PASSED > 39 777 1.00 -3 -1 PASSED > 40 777 -1.00 -3 -1 PASSED > 41 777 0.90 -3 -1 PASSED > 42 777 1.00 -3 3 PASSED > 43 777 -1.00 -3 3 PASSED > 44 777 0.90 -3 3 PASSED > 45 777 1.00 -3 -2 PASSED > 46 777 -1.00 -3 -2 PASSED > 47 777 0.90 -3 -2 PASSED > 1 of 48 CPSC TESTS FAILED!! > > make[8]: *** [dcpsctest] Error 1 > TST: make dcpsctest urout=cpsc1_x1y1.c opt="" > rm -f dcpsc.c dcpsc.o > cp > /sw/src/fink.build/atlas-3.9.11-12/bld/../ATLAS//tune/blas/level1/CPSC/cpsc1_x1y1.c > dcpsc.c > gcc -DL2SIZE=4194304 -I/sw/src/fink.build/atlas-3.9.11-12/bld/include > -I/sw/src/fink.build/atlas-3.9.11-12/bld/../ATLAS//include > -I/sw/src/fink.build/atlas-3.9.11-12/bld/../ATLAS//include/contrib > -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX > -DATL_ARCH_UNKNOWNx86 -DATL_CPUMHZ=3600 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 > -DATL_GAS_x8632 -DATL_FULL_LAPACK -DATL_NCPU=4 -O -fomit-frame-pointer > -m32 -DDREAL -c dcpsc.c > gcc -DL2SIZE=4194304 -I/sw/src/fink.build/atlas-3.9.11-12/bld/include > -I/sw/src/fink.build/atlas-3.9.11-12/bld/../ATLAS//include > -I/sw/src/fink.build/atlas-3.9.11-12/bld/../ATLAS//include/contrib > -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX > -DATL_ARCH_UNKNOWNx86 -DATL_CPUMHZ=3600 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 > -DATL_GAS_x8632 -DATL_FULL_LAPACK -DATL_NCPU=4 -fPIC -O3 > -fomit-frame-pointer -mfpmath=387 -m32 -o xdcpsctst dcpsctest.o \ > ATL_dcpsc_stub.o dcpsc.o > /sw/src/fink.build/atlas-3.9.11-12/bld/lib/libtstatlas.a -lpthread -lm > /sw/src/fink.build/atlas-3.9.11-12/bld/bin/ATLrun.sh > /sw/src/fink.build/atlas-3.9.11-12/bld/tune/blas/level1 xdcpsctst -n 777 > ITST N alpha incX incY TEST > ====== ======== ======== ==== ==== ====== > 0 777 1.00 1 1 PASSED > 1 777 -1.00 1 1 PASSED > 2 777 0.90 1 1 PASSED > ALL CPSC SANITY TESTS PASSED. > > make[7]: *** [dinstall_cpsc] Bus error > make[6]: *** [Make_dcpsc] Error 2 > make[5]: *** [dgen] Error 2 > make[4]: *** [dlib] Error 2 > make[3]: *** [lib.grd] Error 2 > make[2]: *** [IStage1] Error 2 > ERROR 577 DURING CACHESIZE SEARCH!!. CHECK INSTALL_LOG/Stage1.log FOR > DETAILS. > cd /sw/src/fink.build/atlas-3.9.11-12/bld ; make error_report > make -f Make.top error_report > uname -a 2>&1>> bin/INSTALL_LOG/ERROR.LOG > gcc -v 2>&1>> bin/INSTALL_LOG/ERROR.LOG > Using built-in specs. > COLLECT_GCC=gcc > COLLECT_LTO_WRAPPER=/sw/lib/gcc4.6/libexec/gcc/i386-apple-darwin10.8.0/4.6.3/lto-wrapper > Target: i386-apple-darwin10.8.0 > Configured with: ../gcc-4.6.3/configure --prefix=/sw > --prefix=/sw/lib/gcc4.6 --mandir=/sw/share/man > --infodir=/sw/lib/gcc4.6/info > --enable-languages=c,c++,fortran,lto,objc,obj-c++,java --with-gmp=/sw > --with-libiconv-prefix=/sw --with-ppl=/sw --with-cloog=/sw > --with-mpc=/sw --with-system-zlib --x-includes=/usr/X11R6/include > --x-libraries=/usr/X11R6/lib --program-suffix=-fsf-4.6 > --enable-cloog-backend=isl > Thread model: posix > gcc version 4.6.3 (GCC) > gcc -V 2>&1>> bin/INSTALL_LOG/ERROR.LOG > gcc: error: unrecognized option '-V' > gcc: fatal error: no input files > compilation terminated. > make[4]: [error_report] Error 1 (ignored) > gcc --version 2>&1>> bin/INSTALL_LOG/ERROR.LOG > tar cf error_UNKNOWNx8632SSE3.tar Make.inc bin/INSTALL_LOG/* > gzip --best error_UNKNOWNx8632SSE3.tar > mv error_UNKNOWNx8632SSE3.tar.gz error_UNKNOWNx8632SSE3.tgz > Error report error_<ARCH>.tgz has been created in your top-level ATLAS > directory. Be sure to include this file in any help request. > cat: ../../CONFIG/error.txt: No such file or directory > cat: ../../CONFIG/error.txt: No such file or directory > make[1]: *** [build] Error 255 > make: *** [build] Error 2 > ### execution of /tmp/fink.jbKjh failed, exit code 2 > Removing runtime build-lock... > Removing build-lock package... > /sw/bin/dpkg-lockwait -r fink-buildlock-atlas-3.9.11-12 > (Reading database ... 202738 files and directories currently installed.) > Removing fink-buildlock-atlas-3.9.11-12 ... > Failed: phase compiling: atlas-3.9.11-12 failed > > Before reporting any errors, please run "fink selfupdate" and try again. > Also try using "fink configure" to set your maximum build jobs to 1 and > attempt to build the package again. > If you continue to have issues, please check to see if the FAQ on Fink's > website solves the problem. If not, ask on one (not both, please) of > these mailing lists: > > The Fink Users List<[email protected]> > The Fink Beginners List<[email protected]>. > > Please try to include the complete error message in your report. This > generally consists of a compiler line starting with e.g. "gcc" or "g++" > followed by the actual error output from the compiler. > > Also include the following system information: > Package manager version: 0.32.5.5 > Distribution version: selfupdate-rsync Wed Apr 11 11:33:52 2012, 10.6, i386 > Trees: local/main stable/main stable/crypto unstable/main unstable/crypto > Xcode: 3.2.6 > Max. Fink build jobs: 4 > > > ATLAS is very hardware-dependent, and is known not to build on sufficiently new machines. It doesn't work on mine, for example. :-\
A couple of our maintainers have package descriptions based on newer upstream ATLAS versions: http://fink.cvs.sourceforge.net/viewvc/fink/experimental/jfmertens/main/finkinfo/sci/atlas.info?revision=1.44 http://fink.cvs.sourceforge.net/viewvc/fink/experimental/fangism/finkinfo/atlas.info?revision=1.9 I'd recommend downloading one of those, copying or moving the file to /sw/fink/dists/local/main/finkinfo/ (to avoid losing it when you selfupdate), and try "fink install atlas" to see if that works for you. -- Alexander Hansen, Ph.D. Fink User Liaison http://finkakh.wordpress.com/2012/02/21/got-job/ ------------------------------------------------------------------------------ Better than sec? Nothing is better than sec when it comes to monitoring Big Data applications. Try Boundary one-second resolution app monitoring today. Free. http://p.sf.net/sfu/Boundary-dev2dev _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
