> I'm not sure how "the latter two are not installed" on your system,
> given that "fink list -u" displays up-to-date INSTALLED packages.

Below is a session transcript that clearly shows that neither fftw, nor fftw3 
nor gcc46 are installed:
$ fink remove fftw
Information about 4955 packages read in 7 seconds.
WARNING: fftw is not installed, skipping.
Nothing removed
$ fink remove fftw3
Information about 4955 packages read in 1 seconds.
WARNING: fftw3 is not installed, skipping.
Nothing removed
$ fink list -ut | cut -f2 | xargs fink dumpinfo -finfofile | grep "info$" | 
sort | uniq | cut -d: -f2 | xargs grep -l gcc46        
not found.
not found.
/sw/fink/dists/stable/main/finkinfo/base/gettext-tools.info
/sw/fink/dists/stable/main/finkinfo/languages/gcc46.info
/sw/fink/dists/stable/main/finkinfo/sci/fftw.info
/sw/fink/dists/stable/main/finkinfo/sci/fftw3.info
$ fink remove gcc46
Information about 4955 packages read in 1 seconds.
WARNING: gcc46 is not installed, skipping.
Nothing removed
$


> What does "fink list -o" return?  Since you've followed Option 1, we can
> at least tell what package(s) still remain to be updated.

This is what "fink list -o" returns (note that I have manually been able to use 
"fink install ..." on packages reported in this list:
(i)  hdf5.7              1.8.9-1        Scientific data format (v1.8 
API)--headers
(i)  hdf5.7-bin          1.8.9-1        Scientific data format (v1.8 
API)--executables
(i)  hdf5.7-shlibs       1.8.9-1        Scientific data format (v1.8 
API)--shared C/C++ libraries
(i)  libcurl4            7.26.0-1       Lib. for transferring files with URL 
syntax
(i)  libcurl4-shlibs     7.26.0-1       Lib. for transferring files with URL 
syntax
(i)  libmikmod3          3.2.0-beta4-1  Sound library for playing MOD modules
(i)  libmikmod3-shlibs   3.2.0-beta4-1  Sound library for playing MOD modules
(i)  libmpfr4            3.1.0-5.p10    C floating-point math lib
(i)  libmpfr4-shlibs     3.1.0-5.p10    Shared libraries for mpfr package
(i)  libvorbis0          1.3.3-2        Vorbis audio codec headers and libs for 
devs
(i)  libvorbis0-shlibs   1.3.3-2        Vorbis audio codec shared libraries
(i)  openmotif3-shlibs   2.2.4-7        Official Implementation of OSF/Motif
(i)  openmotif4          2.3.3-1        Official Implementation of OSF/Motif
(i)  openmotif4-shlibs   2.3.3-1        Official Implementation of OSF/Motif
(i)  openmpi-shlibs      1.5.5-2        Shared libraries for openmpi package
(i)  passwd-core         20100305-5     User and group entries for daemons: 
core pkg
(i)  passwd-games        20100305-5     User and group entries for the 
games-files owner
(i)  passwd-messagebus   20100305-5     User and group entries for the dbus 
daemon
(i)  unrar               4.2.3-1        RAR archive decoder
(i)  xrootd              3.2.1-11       Distributed access to data repositories
(i)  xrootd-dev          3.2.1-11       Distributed access to data repositories

On Jun 12, 2012, at 3:50 PM, Alexander Hansen wrote:

> On 6/12/12 5:42 AM, Dr. Wolfram Schroers wrote:
>> Option 1. seems to work.
>> 
>> Option 2. returns 
>> "/sw/fink/dists/stable/main/finkinfo/languages/gcc46.info". I did not 
>> install gcc46, so I don't know what to do with that information.
> Iterating the command with "gcc46" returns "gettext-tools", "fftw" and
> "fftw3". The latter two are not installed on my system, but the former
> is used by a large number of packages (including gcc46).
> 
> I'm not sure how "the latter two are not installed" on your system,
> given that "fink list -u" displays up-to-date INSTALLED packages.
> 
> In any event gettext-tools doesn't _use_ gcc46, but rather has a build
> conflict against it.
> 
>> 
>> Do I understand it correctly that attempting to install a package that 
>> depends indirectly on the JDK header files will move Fink into a state where 
>> I need to manually search and fix the dependency-tree to recover from?
>> 
>> 
> 
> No.  You just can't run "fink update-all" with your given installed
> package setup.
> 
> ppl9 won't build if it can't find Java headers.
> 
> It may be the case that the build process will actually find them, and
> it just happens that you're missing the piece that Fink is looking for.
> Other people have had this problem before and have been able to satisfy
> Fink by adding a symbolic link.
> 
> Or it may be the case that ppl9 can be configured not to try to build
> Java stuff.  I don't know if supports that, however.
> 
> What does "fink list -o" return?  Since you've followed Option 1, we can
> at least tell what package(s) still remain to be updated.
> 
> 
> -- 
> Alexander Hansen, Ph.D.
> Fink User Liaison
> My package updates: http://finkakh.wordpress.com/


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