pil-py27 is the package that was looking for X11/Xlib.h, the dependency
connection to biopython is: biopython-py27 -> reportlab-py27 -> pil-py27
I have banished the symlink from my computer, and I have tried both of the
following without success (relevant error message below). I am a fairly
unsophisticated fink user, and its been a long time since I worked with gcc, so
I would appreciate suggestions about how to get this to work the "Right Way"
export CPPFLAGS="-I/opt/X11/include"; fink install pil-py27
export CPPFLAGS="-I/usr/X11/include"; fink install pil-py27
Thanks!
Josh
---------------------------------------------------------
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-prototypes -IlibImaging -I/sw/include/freetype2 -I/sw/include
-I/usr/include -I/sw/include/python2.7 -c _imagingtk.c -o
build/temp.macosx-10.8-x86_64-2.7/_imagingtk.o
In file included from _imagingtk.c:19:
/sw/include/tk.h:76:11: fatal error: 'X11/Xlib.h' file not found
# include <X11/Xlib.h>
^
1 error generated.
error: command 'gcc' failed with exit status 1
### execution of /sw/bin/python2.7 failed, exit code 1
### execution of /tmp/fink.ByDpK failed, exit code 1
Also include the following system information:
Package manager version: 0.34.4
Distribution version: selfupdate-rsync Thu Jan 3 18:57:20 2013, 10.8, x86_64
Trees: local/main stable/main
Xcode.app: 4.5.2
Xcode command-line tools: 4.5.0.0.1.1249367152
Max. Fink build jobs: 4
---------------------------------------------------------
On Jan 9, 2013, at 6:50 PM, Alexander Hansen <[email protected]>
wrote:
> On 1/9/13 1:19 AM, Josh Granek wrote:
>>
>> P.S. Another problem I encountered when installing biopython-py27 is the
>> need to deal with the fact that X11/Xlib.h is not where it used to be (since
>> XQuartz puts it in a different place than Apple X11 had it). Unfortunately
>> I didn't think to save the error message. This URL explains the problem and
>> gives several solutions
>> <http://stackoverflow.com/questions/11465258/xlib-h-not-found-when-building-graphviz-on-mac-os-x-10-8-mountain-lion>.
>> Creating a symlink as follows worked for me:
>>
>> sudo ln -s /opt/X11/include/X11 /usr/local/include/X11
>>
>>
>
> The error must have been in some other package. I don't see this with
> biopython-py* on 10.8.
>
> --
> Alexander Hansen, Ph.D.
> Fink User Liaison
> My package updates: http://finkakh.wordpress.com/
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