[ 64%] Building C object src/mdlib/CMakeFiles/md.dir/wnblist.c.o
Linking C shared library libmd_mpi.dylib
[ 64%] Built target md
make: *** [all] Error 2
### execution of /tmp/fink.6dfnm failed, exit code 2
### execution of /tmp/fink.U_Vpg failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-gromacs-mpi-openmpi-4.6-1
(Reading database ... 279256 files and directories currently installed.)
Removing fink-buildlock-gromacs-mpi-openmpi-4.6-1 ...
Failed: phase compiling: gromacs-mpi-openmpi-4.6-1 failed
Package manager version: 0.34.5
Distribution version: selfupdate-rsync Mon Feb 18 13:06:45 2013, 10.6, x86_64
Trees: local/main stable/main unstable/main unstable/crypto
Xcode.app: 3.2.6
Xcode command-line tools: 3.2.6
Max. Fink build jobs: 4
Interestingly, with jobs=1 it fails earlier:
[ 53%] Building C object share/template/CMakeFiles/template.dir/template.c.o
In file included from /sw/include/gromacs/futil.h:45:0,
from /sw/include/gromacs/filenm.h:49,
from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:32:
/sw/include/gromacs/typedefs.h:92:31: error: unknown type name 'bool'
/sw/include/gromacs/typedefs.h:129:33: error: unknown type name 'bool'
/sw/include/gromacs/typedefs.h:140:48: error: unknown type name 'bool'
/sw/include/gromacs/typedefs.h:153:47: error: unknown type name 'bool'
/sw/include/gromacs/typedefs.h:157:34: error: unknown type name 'bool'
In file included from /sw/include/gromacs/filenm.h:49:0,
from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:32:
/sw/include/gromacs/futil.h:67:1: error: unknown type name 'bool'
/sw/include/gromacs/futil.h:70:1: error: unknown type name 'bool'
/sw/include/gromacs/futil.h:73:1: error: unknown type name 'bool'
/sw/include/gromacs/futil.h:82:1: error: unknown type name 'bool'
/sw/include/gromacs/futil.h:99:1: error: unknown type name 'bool'
/sw/include/gromacs/futil.h:109:1: error: unknown type name 'bool'
/sw/include/gromacs/futil.h:111:47: error: unknown type name 'bool'
/sw/include/gromacs/futil.h:113:43: error: unknown type name 'bool'
In file included from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:32:0:
/sw/include/gromacs/filenm.h:82:8: error: unknown type name 'bool'
/sw/include/gromacs/filenm.h:113:1: error: unknown type name 'bool'
/sw/include/gromacs/filenm.h:116:1: error: unknown type name 'bool'
/sw/include/gromacs/filenm.h:130:1: error: unknown type name 'bool'
/sw/include/gromacs/filenm.h:133:1: error: unknown type name 'bool'
/sw/include/gromacs/filenm.h:136:1: error: unknown type name 'bool'
In file included from /sw/include/gromacs/statutil.h:51:0,
from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:36:
/sw/include/gromacs/readinp.h:48:3: error: unknown type name 'bool'
/sw/include/gromacs/readinp.h:49:3: error: unknown type name 'bool'
/sw/include/gromacs/readinp.h:57:6: error: unknown type name 'bool'
/sw/include/gromacs/readinp.h:69:21: error: unknown type name 'bool'
/sw/include/gromacs/readinp.h:103:3: error: unknown type name 'bool'
/sw/include/gromacs/readinp.h:111:5: error: unknown type name 'bool'
/sw/include/gromacs/readinp.h:118:9: error: unknown type name 'bool'
/sw/include/gromacs/readinp.h:125:1: error: unknown type name 'bool'
/sw/include/gromacs/readinp.h:135:1: error: unknown type name 'bool'
/sw/include/gromacs/readinp.h:143:1: error: unknown type name 'bool'
/sw/include/gromacs/readinp.h:145:59: error: unknown type name 'bool'
/sw/include/gromacs/readinp.h:147:43: error: unknown type name 'bool'
In file included from /sw/include/gromacs/statutil.h:52:0,
from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:36:
/sw/include/gromacs/wman.h:57:9: error: unknown type name 'bool'
In file included from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:36:0:
/sw/include/gromacs/statutil.h:60:3: error: unknown type name 'bool'
/sw/include/gromacs/statutil.h:70:1: error: unknown type name 'bool'
/sw/include/gromacs/statutil.h:93:43: error: unknown type name 'bool'
/sw/include/gromacs/statutil.h:132:1: error: unknown type name 'bool'
/sw/include/gromacs/statutil.h:132:51: error: unknown type name 'bool'
/sw/include/gromacs/statutil.h:143:57: error: unknown type name 'bool'
/sw/include/gromacs/statutil.h:210:1: error: unknown type name 'bool'
/sw/include/gromacs/statutil.h:223:1: error: unknown type name 'bool'
/sw/include/gromacs/statutil.h:242:1: error: unknown type name 'bool'
/sw/include/gromacs/statutil.h:245:1: error: unknown type name 'bool'
In file included from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:37:0:
/sw/include/gromacs/xvgr.h:83:1: error: unknown type name 'bool'
/sw/include/gromacs/xvgr.h:150:8: error: unknown type name 'bool'
/sw/include/gromacs/xvgr.h:151:8: error: unknown type name 'bool'
/sw/include/gromacs/xvgr.h:152:8: error: unknown type name 'bool'
In file included from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:38:0:
/sw/include/gromacs/gmx_fatal.h:149:16: error: unknown type name 'bool'
/sw/include/gromacs/gmx_fatal.h:175:1: error: unknown type name 'bool'
/sw/include/gromacs/gmx_fatal.h:179:1: error: unknown type name 'bool'
In file included from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/build/share/template/gromacs/trajana.h:70:0,
from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:41:
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/build/share/template/gromacs/selection.h:164:20:
error: unknown type name 'output_env_t'
In file included from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:41:0:
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/build/share/template/gromacs/trajana.h:223:19:
error: unknown type name 'output_env_t'
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:
In function 'gmx_template':
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:145:5:
error: unknown type name 'output_env_t'
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:160:5:
warning: implicit declaration of function 'parse_trjana_args'
[-Wimplicit-function-declaration]
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:192:25:
error: too many arguments to function 'xvgropen'
In file included from
/sw/src/fink.build/gromacs-mpi-openmpi-4.6-1/gromacs-4.6/share/template/template.c:37:0:
/sw/include/gromacs/xvgr.h:86:14: note: declared here
make[2]: *** [share/template/CMakeFiles/template.dir/template.c.o] Error 1
make[1]: *** [share/template/CMakeFiles/template.dir/all] Error 2
make: *** [all] Error 2
### execution of /tmp/fink.J_9_t failed, exit code 2
### execution of /tmp/fink.084nQ failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-gromacs-mpi-openmpi-4.6-1
(Reading database ... 279256 files and directories currently installed.)
Removing fink-buildlock-gromacs-mpi-openmpi-4.6-1 ...
Failed: phase compiling: gromacs-mpi-openmpi-4.6-1 failed
Same error happens with jobs=4, but somehow the process continues.
Best regards,
Dmitry
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