Hi, I followed the issues with GMX 4.6 and waited. So today I gave a try
and got this:

[skip]
make
[  0%] Building NVCC (Device) object
src/gmxlib/gpu_utils/CMakeFiles/gpu_utils.dir//./gpu_utils_generated_memtestG80_core.cu.o
[  0%] Building NVCC (Device) object
src/gmxlib/gpu_utils/CMakeFiles/gpu_utils.dir//./gpu_utils_generated_gpu_utils.cu.o
Scanning dependencies of target gpu_utils
[  0%] Building CXX object
src/gmxlib/gpu_utils/CMakeFiles/gpu_utils.dir/dummy.cpp.o
Linking CXX static library libgpu_utils.a
/usr/bin/ranlib: file: libgpu_utils.a(dummy.cpp.o) has no symbols
/usr/bin/ranlib: file: libgpu_utils.a(dummy.cpp.o) has no symbols
[  0%] Built target gpu_utils
[  0%] Building NVCC (Device) object
src/gmxlib/cuda_tools/CMakeFiles/cuda_tools.dir//./cuda_tools_generated_pmalloc_cuda.cu.o
/sw/src/fink.build/gromacs-4.6-2/gromacs-4.6/src/gmxlib/cuda_tools/
pmalloc_cuda.cu(64): error: no instance of overloaded function
"cudaMallocHost" matches the argument list
            argument types are: (void **, size_t, int)

/sw/src/fink.build/gromacs-4.6-2/gromacs-4.6/src/gmxlib/cuda_tools/
pmalloc_cuda.cu(87): error: no instance of overloaded function
"cudaMallocHost" matches the argument list
            argument types are: (void **, size_t, int)

2 errors detected in the compilation of
"/tmp/tmpxft_000029fc_00000000-4_pmalloc_cuda.cpp1.ii".
CMake Error at cuda_tools_generated_pmalloc_cuda.cu.o.cmake:264 (message):
  Error generating file

/sw/src/fink.build/gromacs-4.6-2/gromacs-4.6/build/src/gmxlib/cuda_tools/CMakeFiles/cuda_tools.dir//./cuda_tools_generated_pmalloc_cuda.cu.o


make[2]: ***
[src/gmxlib/cuda_tools/CMakeFiles/cuda_tools.dir/./cuda_tools_generated_pmalloc_cuda.cu.o]
Error 1
make[1]: *** [src/gmxlib/cuda_tools/CMakeFiles/cuda_tools.dir/all] Error 2
make: *** [all] Error 2
### execution of /tmp/fink._AHcW failed, exit code 2
### execution of /tmp/fink.9rNkw failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-gromacs-4.6-2
(Reading database ... 179750 files and directories currently installed.)
Removing fink-buildlock-gromacs-4.6-2 ...
Reading buildlock packages...
/sw/bin/dpkg-lockwait -i /sw/fink/debs/gromacs_4.5.4-2_darwin-x86_64.deb
Selecting previously deselected package gromacs.
(Reading database ... 179749 files and directories currently installed.)
Unpacking gromacs (from .../gromacs_4.5.4-2_darwin-x86_64.deb) ...
Setting up gromacs (4.5.4-2) ...

Updating the list of locally available binary packages.
Failed: phase installing: gromacs-4.6-2 failed

Package manager version: 0.34.5
Distribution version: selfupdate-rsync Mon Mar  4 13:32:14 2013, 10.8,
x86_64
Trees: local/main stable/main local/injected
Xcode.app: 4.6
Xcode command-line tools: 4.5.0.0.1.1249367152
Max. Fink build jobs:  4



-- 
Alan Wilter SOUSA da SILVA, DSc
Bioinformatician, UniProt - PANDA, EMBL-EBI
CB10 1SD, Hinxton, Cambridge, UK
+44 1223 49 4588
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