Hi,
I wanted to install coot using fink and I followed the instructions in this
website:
http://scottlab.ucsc.edu/~wgscott/xtal/wiki/index.php/Installing_Coot_on_OS_X#Compiling_Coot_from_source:_Please_use_Fink
I did run "fink selfupdate" and tried thrice, still I get the error (copied
below) with installation wit cmake. I am installing this in Mac laptop OSX
10.7.5. Please let me know how to troubleshoot this issue.
I tried installing the .dmg file from here
http://www.cmake.org/cmake/resources/software.html , thinking that fink
will detect the installed cmake, seems like it didn't.
Thanks and Regards,
Raghu
gcc -I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Bootstrap.cmk
-I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Source
-I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Bootstrap.cmk
-DKWSYS_NAMESPACE=cmsys -c
/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Source/kwsys/ProcessUNIX.c
-o ProcessUNIX.o
gcc -I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Bootstrap.cmk
-I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Source
-I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Bootstrap.cmk
-DKWSYS_NAMESPACE=cmsys -DKWSYS_STRING_C -c
/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Source/kwsys/String.c -o
String.o
gcc -I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Bootstrap.cmk
-I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Source
-I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Bootstrap.cmk
-DKWSYS_NAMESPACE=cmsys -c
/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Source/kwsys/System.c -o
System.o
g++ -L/sw/lib -framework CoreFoundation
-I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Bootstrap.cmk
-I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Source
-I/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Bootstrap.cmk
cmStandardIncludes.o cmake.o cmakemain.o cmakewizard.o
cmCommandArgumentLexer.o cmCommandArgumentParser.o
cmCommandArgumentParserHelper.o cmDefinitions.o cmDepends.o cmDependsC.o
cmDocumentationFormatter.o cmDocumentationFormatterText.o cmPolicies.o
cmProperty.o cmPropertyMap.o cmPropertyDefinition.o
cmPropertyDefinitionMap.o cmMakeDepend.o cmMakefile.o
cmExportFileGenerator.o cmExportInstallFileGenerator.o cmExportSet.o
cmExportSetMap.o cmInstallDirectoryGenerator.o cmGeneratedFileStream.o
cmGeneratorTarget.o cmGeneratorExpressionDAGChecker.o
cmGeneratorExpressionEvaluator.o cmGeneratorExpressionLexer.o
cmGeneratorExpressionParser.o cmGeneratorExpression.o cmGlobalGenerator.o
cmLocalGenerator.o cmInstallGenerator.o cmInstallExportGenerator.o
cmInstallFilesGenerator.o cmInstallScriptGenerator.o
cmInstallTargetGenerator.o cmScriptGenerator.o cmSourceFile.o
cmSourceFileLocation.o cmSystemTools.o cmTestGenerator.o cmVersion.o
cmFileTimeComparison.o cmGlobalUnixMakefileGenerator3.o
cmLocalUnixMakefileGenerator3.o cmMakefileExecutableTargetGenerator.o
cmMakefileLibraryTargetGenerator.o cmMakefileTargetGenerator.o
cmMakefileUtilityTargetGenerator.o cmOSXBundleGenerator.o cmNewLineStyle.o
cmBootstrapCommands.o cmCommands.o cmTarget.o cmTest.o cmCustomCommand.o
cmCustomCommandGenerator.o cmDocumentVariables.o cmCacheManager.o
cmListFileCache.o cmComputeLinkDepends.o cmComputeLinkInformation.o
cmOrderDirectories.o cmComputeTargetDepends.o cmComputeComponentGraph.o
cmExprLexer.o cmExprParser.o cmExprParserHelper.o cmGlobalNinjaGenerator.o
cmLocalNinjaGenerator.o cmNinjaTargetGenerator.o
cmNinjaNormalTargetGenerator.o cmNinjaUtilityTargetGenerator.o
cmListFileLexer.o Directory.o Glob.o RegularExpression.o SystemTools.o
ProcessUNIX.o String.o System.o -o cmake
loading initial cache file
/sw/src/fink.build/cmake-2.8.10.2-1/cmake-2.8.10.2/Bootstrap.cmk/InitialCacheFlags.cmake
-- The C compiler identification is Clang 4.2.0
-- The CXX compiler identification is Clang 4.2.0
CMake Error at Modules/Platform/Darwin.cmake:190 (message):
CMAKE_OSX_DEPLOYMENT_TARGET is '10.7' but CMAKE_OSX_SYSROOT:
""
is not set to a MacOSX SDK with a recognized version. Either set
CMAKE_OSX_SYSROOT to a valid SDK or set CMAKE_OSX_DEPLOYMENT_TARGET to
empty.
Call Stack (most recent call first):
Modules/CMakeSystemSpecificInformation.cmake:36 (include)
CMakeLists.txt:14 (project)
-- Configuring incomplete, errors occurred!
---------------------------------------------
Error when bootstrapping CMake:
Problem while running initial CMake
---------------------------------------------
### execution of /tmp/fink.yEM0S failed, exit code 11
### execution of /tmp/fink.0ZeMn failed, exit code 11
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cmake-2.8.10.2-1
(Reading database ... 36324 files and directories currently installed.)
Removing fink-buildlock-cmake-2.8.10.2-1 ...
Failed: phase compiling: cmake-2.8.10.2-1 failed
Before reporting any errors, please run "fink selfupdate" and try again.
If you continue to have issues, please check to see if the FAQ on Fink's
website solves the problem. If not, ask on one (not both, please) of
these mailing lists:
The Fink Users List <[email protected]>
The Fink Beginners List <[email protected]>,
with a carbon copy to the maintainer:
Martin Costabel <[email protected]>
Note that this is preferable to emailing just the maintainer directly,
since most fink package maintainers do not have access to all possible
hardware and software configurations.
Please try to include the complete error message in your report. This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.
Also include the following system information:
Package manager version: 0.34.6
Distribution version: selfupdate-rsync Fri Mar 15 18:33:16 2013, 10.7,
x86_64
Trees: local/main stable/main
No recognized Xcode.app installed
Xcode command-line tools: 4.6.0.0.1.1362189000
Max. Fink build jobs: 1
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