Hi Bill, I get the following error when trying to update rdkit:
cmake -DFLEX_EXECUTABLE:FILEPATH=/usr/bin/flex -DCMAKE_OSX_SYSROOT:PATH="/"
-DCMAKE_OSX_DEPLOYMENT_TARGET:STRING="" -DCMAKE_INSTALL_PREFIX=/sw
-DCMAKE_INSTALL_NAME_DIR=/sw/lib/rdkit -DCMAKE_PREFIX_PATH=/sw
-DBOOST_LIBRARYDIR="/sw/lib/python2.7/site-packages"
-DBOOST_ROOT="/sw/lib/boost-1_53" -DBoost_NO_SYSTEM_PATHS=ON
-DPYTHON_LIBRARY=/sw/lib/python2.7/config/libpython2.7.dylib
-DPYTHON_INCLUDE_DIR=/sw/include/python2.7
-DPYTHON_EXECUTABLE=/sw/bin/python2.7 ..
-- The C compiler identification is GNU 4.2.1
-- The CXX compiler identification is GNU 4.2.1
-- Checking whether C compiler has -isysroot
-- Checking whether C compiler has -isysroot - yes
-- Checking whether C compiler supports OSX deployment target flag
-- Checking whether C compiler supports OSX deployment target flag - yes
-- Check for working C compiler: /sw/var/lib/fink/path-prefix-10.6/cc
-- Check for working C compiler: /sw/var/lib/fink/path-prefix-10.6/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Checking whether CXX compiler has -isysroot
-- Checking whether CXX compiler has -isysroot - yes
-- Checking whether CXX compiler supports OSX deployment target flag
-- Checking whether CXX compiler supports OSX deployment target flag - yes
-- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-10.6/c++
-- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-10.6/c++ --
works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Found PythonLibs: /sw/lib/python2.7/config/libpython2.7.dylib (found version
"2.7.5")
-- Found PythonInterp: /sw/bin/python2.7 (found version "2.7.5")
-- Boost version: 1.53.0
-- Found the following Boost libraries:
-- python
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Found BISON: /sw/bin/bison
-- Found FLEX: /usr/bin/flex
CMake Error at /sw/share/cmake-2.8/Modules/FindBoost.cmake:1192 (message):
Unable to find the requested Boost libraries.
Boost version: 1.53.0
Boost include path: /sw/include/boost-1_53
The following Boost libraries could not be found:
boost_regex
No Boost libraries were found. You may need to set BOOST_LIBRARYDIR to the
directory containing Boost libraries or BOOST_ROOT to the location of
Boost.
Call Stack (most recent call first):
Code/GraphMol/SLNParse/CMakeLists.txt:5 (find_package)
CMake Error: The following variables are used in this project, but they are set
to NOTFOUND.
Please set them or make sure they are set and tested correctly in the CMake
files:
Boost_REGEX_LIBRARY (ADVANCED)
linked by target "testSLNParse" in directory
/sw/src/fink.build/rdkit-2013.06.1-2/RDKit_2013_06_1/Code/GraphMol/SLNParse
-- Configuring incomplete, errors occurred!
### execution of /tmp/fink.XbHS5 failed, exit code 1
### execution of /tmp/fink.aFiDT failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-rdkit-2013.06.1-2
(Reading database ... 240708 files and directories currently installed.)
Removing fink-buildlock-rdkit-2013.06.1-2 ...
Failed: phase compiling: rdkit-2013.06.1-2 failed
Package manager version: 0.35.1
Distribution version: selfupdate-rsync Fri Sep 6 11:58:14 2013, 10.6, x86_64
Trees: local/main stable/main unstable/main unstable/crypto
Xcode.app: 3.2.6
Xcode command-line tools: 3.2.6
Max. Fink build jobs: 4
Am I missing something?
Best regards,
Dmitry
smime.p7s
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