On 11/10/13 2:34 PM, Dominique Dhumieres wrote:
>
>> Try editing /sw/bin/mkoctfile-3.6.4 as a superuser and change all of the
>> instances of oct-cc to /sw/var/lib/fink/path-prefix-clang/cc and those
>> of oct-cxx to /sw/var/lib/fink/path-prefix-clang/c++ .
>
> Thanks for the tip. I had to edit /sw64/bin/mkoctfile also and
> /sw64/var/lib/fink/path-prefix-clang did not exist (I copied the one
> from 10.8. I am now stuck with the following failures
>
> ans =
> /sw64/src/fink.build/miscellaneous-oct364-1.2.0-3/bld/share/octave/3.6.4/packages
> mkdir (/var/tmp/oct-Eeuiaz)
> untar (./miscellaneous-1.2.0.tar, /var/tmp/oct-Eeuiaz)
> Undefined symbols for architecture x86_64:
> "check_version(std::string const&, std::string const&)", referenced from:
> _Gcell2cell in cell2cell.o
> "octave_dld_function::create(octave_value_list (*)(octave_value_list
> const&, int), octave_shlib const&, std::string const&, std::string const&)",
> referenced from:
> _Gcell2cell in cell2cell.o
> "std::string::_Rep::_M_destroy(std::allocator<char> const&)", referenced
> from:
> _Gcell2cell in cell2cell.o
> Fcell2cell(octave_value_list const&, int) in cell2cell.o
> Array<std::string>::ArrayRep::~ArrayRep() in cell2cell.o
> "std::string::_Rep::_M_dispose(std::allocator<char> const&)", referenced
> from:
> _Gcell2cell in cell2cell.o
> Fcell2cell(octave_value_list const&, int) in cell2cell.o
> "std::string::_Rep::_S_empty_rep_storage", referenced from:
> _Gcell2cell in cell2cell.o
> Fcell2cell(octave_value_list const&, int) in cell2cell.o
> Array<std::string>::ArrayRep::~ArrayRep() in cell2cell.o
> "std::basic_string<char, std::char_traits<char>, std::allocator<char>
> >::basic_string(char const*, std::allocator<char> const&)", referenced from:
> _Gcell2cell in cell2cell.o
> Fcell2cell(octave_value_list const&, int) in cell2cell.o
> "std::ios_base::Init::Init()", referenced from:
> __GLOBAL__sub_I_cell2cell.cc in cell2cell.o
> "std::ios_base::Init::~Init()", referenced from:
> __GLOBAL__sub_I_cell2cell.cc in cell2cell.o
> ld: symbol(s) not found for architecture x86_64
> clang: error: linker command failed with exit code 1 (use -v to see
> invocation)
> make: *** [cell2cell.oct] Error 1
> 'make' returned the following error: mkoctfile -Wall cell2cell.cc
> error: called from 'pkg>configure_make' in file
> /sw64/share/octave/3.6.4/m/pkg/pkg.m near line 1385, column 9
> error: called from:
> error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5
> error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9
> error:
> /sw64/src/fink.build/miscellaneous-oct364-1.2.0-3/bld/octave-forge-comp at
> line 4, column 1
> ### execution of /tmp/fink.0wN0_ failed, exit code 1
> Removing runtime build-lock...
> Removing build-lock package...
> /sw64/bin/dpkg-lockwait -r fink-buildlock-miscellaneous-oct364-1.2.0-3
> (Reading database ... 186574 files and directories currently installed.)
> Removing fink-buildlock-miscellaneous-oct364-1.2.0-3 ...
> Failed: phase compiling: miscellaneous-oct364-1.2.0-3 failed
>
> and
>
> ans =
> /sw64/src/fink.build/odepkg-atlas-oct364-0.8.4-2/bld/share/octave/3.6.4/packages
> mkdir (/var/tmp/oct-yjNzF3)
> untar (./odepkg.tar, /var/tmp/oct-yjNzF3)
> checking for gcc... /sw64/var/lib/fink/path-prefix-clang/cc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether /sw64/var/lib/fink/path-prefix-clang/cc accepts -g... yes
> checking for /sw64/var/lib/fink/path-prefix-clang/cc option to accept ISO
> C89... none needed
> checking for mkoctfile... /sw64/bin/mkoctfile-3.6.4
> retrieving compile and link flags from /sw64/bin/mkoctfile-3.6.4
> checking for F77_FUNC... yes
> checking for octave... /sw64/bin/octave-3.6.4
> checking for OCTAVE_VERSION in Octave... 3.6.4
> checking for octave_config_info('canonical_host_type') in Octave...
> x86_64-apple-darwin
> checking for octave_config_info('SHLEXT') in Octave... dylib
> checking whether ln -s works... yes
> checking for ranlib... ranlib
> checking for strip... strip
> configure: creating ./config.status
> config.status: creating Makeconf
>
> "$prefix" is
> /sw64/src/fink.build/odepkg-atlas-oct364-0.8.4-2/bld/share/octave/3.6.4/packages/odepkg-0.8.4
> "$exec_prefix" is ${prefix}
>
> octave commands will install into the following directories:
> m-files: /sw64/share/octave/3.6.4/site/m/octave-forge
> oct-files:
> /sw64/lib/octave/3.6.4/site/oct/x86_64-apple-darwin/octave-forge
> binaries: /sw64/lib/octave/3.6.4/site/exec/x86_64-apple-darwin
> alternatives:
> m-files: /sw64/share/octave/3.6.4/site/octave-forge-alternatives/m
> oct-files:
> /sw64/lib/octave/3.6.4/site/octave-forge-alternatives/oct/x86_64-apple-darwin
>
> shell commands will install into the following directories:
> binaries: ${exec_prefix}/bin
> man pages: ${datarootdir}/man
> libraries: ${exec_prefix}/lib
> headers: ${prefix}/include
>
> octave-forge is configured with
> octave: /sw64/bin/octave-3.6.4 (version 3.6.4)
> mkoctfile: /sw64/bin/mkoctfile-3.6.4 for Octave 4
>
> find . -name NOINSTALL -print # shows which toolboxes won't be installed
>
> tar: Child died with signal 11
> tar: Error is not recoverable: exiting now
> tar: Child died with signal 11
> tar: Error is not recoverable: exiting now
> tar: Child died with signal 11
> tar: Error is not recoverable: exiting now
> make: *** [hairer] Error 2
> 'make' returned the following error: Unpacking external packages: hairer.tgz
> Unpacking external packages: cash.tgz
> Unpacking external packages: daskr.tgz
> error: called from 'pkg>configure_make' in file
> /sw64/share/octave/3.6.4/m/pkg/pkg.m near line 1385, column 9
> error: called from:
> error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5
> error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9
> error:
> /sw64/src/fink.build/odepkg-atlas-oct364-0.8.4-2/bld/octave-forge-comp at
> line 4, column 1
> ### execution of /tmp/fink.0q1fC failed, exit code 1
> Removing runtime build-lock...
> Removing build-lock package...
> /sw64/bin/dpkg-lockwait -r fink-buildlock-odepkg-atlas-oct364-0.8.4-2
> (Reading database ... 186574 files and directories currently installed.)
> Removing fink-buildlock-odepkg-atlas-oct364-0.8.4-2 ...
> Failed: phase compiling: odepkg-atlas-oct364-0.8.4-2 failed
>
> Dominique
>
I haven't had a chance to look into miscellaneous yet, , but the odepkg
issue looks like a problem we've been having with fink's tar. See if a
selfupdate and tar-1.26-4 will fix that.
--
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/
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