Many thanks!
It did work indeed, with this:
diff
/sw/fink/dists/stable/main/finkinfo/sci/rpy2-py.info/sw/fink/dists/local/main/finkinfo/
rpy2-py.info
5,6c5,6
< Revision: 5
< Description: Python module to access R (2.15) functions
---
> Revision: 5.1
> Description: Python module to access R (3.0) functions
13,14c13,14
< BuildDepends: fink (>= 0.24.12-1), r-base215-dev, r-base
< Depends: python%type_pkg[python], r-base215, numpy-py%type_pkg[python]
(>= 1.3.0-7)
---
> BuildDepends: fink (>= 0.24.12-1), r-base30-dev, r-base
> Depends: python%type_pkg[python], r-base30, numpy-py%type_pkg[python] (>=
1.3.0-7)
22c22
< SetLDFLAGS:
-L%p/Library/Frameworks/R.framework/Versions/2.15/Resources/lib -undefined
dynamic_lookup
---
> SetLDFLAGS:
-L%p/Library/Frameworks/R.framework/Versions/3.0/Resources/lib -undefined
dynamic_lookup
26c26
< %p/bin/python%type_raw[python] setup.py build
--r-home=%p/Library/Frameworks/R.framework/Versions/2.15/Resources
---
> %p/bin/python%type_raw[python] setup.py build
--r-home=%p/Library/Frameworks/R.framework/Versions/3.0/Resources
and don’t forget rpy2-py.patch.
Alan
On 12 February 2014 19:49, Hanspeter Niederstrasser
<f...@snaggledworks.com>wrote:
> On 2/12/2014 5:17 AM, Alan wrote:
>
>> fink install rpy2-py27
>> Information about 8381 packages read in 1
>> seconds.
>> Can't resolve dependency "r-base215-dev" for package "rpy2-py27-2.2.2-5"
>> (no matching packages/versions found)
>> Exiting with failure.
>>
>> Package manager version: 0.36.3.1
>> Distribution version: selfupdate-rsync Wed Feb 12 10:15:25 2014, 10.9,
>> x86_64
>> Trees: local/main stable/main
>> No recognized Xcode.app installed
>> Xcode command-line tools: 5.0.1.0.1.1382131676
>>
>
> Passing this on to the rpy2 maintainer.
>
> r-base215 has been excluded from OS X 10.9, but rpy2 might work with
> r-base-3.0. You can copy the file /sw/fink/dists/10.7/stable/
> main/finkinfo/sci/rpy2-py.info to /sw/fink/dists/local/main/finkinfo,
> increase the Revision: field to 5.1, and change all instances of r-base215
> to r-base30, then try to rebuild rpy2-py27. If it works, please post back
> to the list (and to the Maintainer), so that rpy2 can be updated to use the
> newer rpy2.
>
> Baba: rpy2 upstream is also now at 2.3.0, which is newer than our version.
>
> Hanspeter
>
>
--
Alan Wilter SOUSA da SILVA, DSc
Bioinformatician, UniProt
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
Tel: +44 (0)1223 494588
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