The case-sensitive file system certainly could be a culprit. Perhaps another user with such a file system could try to reproduce the bug.
On Saturday, October 25, 2014, Viv Kendon <v...@trellick.net> wrote: > Jack, > > No dice, after rebuilding r-base the error is still the same. Fink is > fully up to date and /usr/local doesn’t exist. I checked the freshly built > R really did get installed: > > ls -l /sw/bin/R > 8 lrwxr-xr-x 1 root admin 63 Oct 25 18:42 /sw/bin/R@ -> > /sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R > ls -l /sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R > 24 -rwxr-xr-x 1 root admin 8866 Oct 25 18:42 > /sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R* > > This is a case-sensitive file system, I can’t think of anything else > non-standard I’ve done. > I don’t currently have anything else cran-* installed, just > r-base,shlibs,dev. Can you think of anything else I could check? > > many thanks, > — Viv > > > On 25 Oct 2014, at 17:39, Viv Kendon <v...@trellick.net <javascript:;>> > wrote: > > > Jack, > > > > Hmmm, maybe I need to rebuild R, possibly it got built with an earlier > java installed. I will try that after the current thing I’m building > finishes… > > > > many thanks, > > — Viv > > > > > > On 25 Oct 2014, at 17:08, Jack Howarth <howarth.at.f...@gmail.com > <javascript:;>> wrote: > > > >> Viv, > >> On reflection, the problem looks more like with R itself... > >> > >> pushd /sw/src/fink.build/cran-javagd-r31-0.6-1-1/JavaGD/.. && $BIN_R > --verbose CMD install > --library=/sw/src/fink.build/root-cran-javagd-r31-0.6-1-1/sw/lib/R/3.1/site-library > JavaGD > >> /sw/src/fink.build/cran-javagd-r31-0.6-1-1 > /sw/src/fink.build/cran-javagd-r31-0.6-1-1/JavaGD > >> install: illegal option -- - > >> usage: install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode] > >> [-o owner] file1 file2 > >> install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode] > >> [-o owner] file1 ... fileN directory > >> install -d [-v] [-g group] [-m mode] [-o owner] directory ... > >> > >> Did you 'fink self update' and 'fink update-all' first? I don't have > any problems with 'fink install cran-javagd-r31' here. > >> Jack > >> ps Of course, you also want to move /usr/local aside to make sure there > isn't any third-party packages interfering with fink. > >> > >> On Sat, Oct 25, 2014 at 11:43 AM, Viv Kendon <v...@trellick.net > <javascript:;>> wrote: > >> Jack, > >> > >> well, fink thinks it is installed: > >> > >> i system-java 1.7.0-1 [virtual package representing Java 1.7.0] > >> i system-java-dev 1.7.0-1 [virtual package representing Java SDK > 1.7.0] > >> i system-java17 1.7.0-1 [virtual package representing Java 1.7.0] > >> i system-java17-dev 1.7.0-1 [virtual package representing > Java 1.7.0 development headers] > >> > >>>> java -version > >> java version "1.7.0_51" > >> Java(TM) SE Runtime Environment (build 1.7.0_51-b13) > >> Java HotSpot(TM) 64-Bit Server VM (build 24.51-b03, mixed mode) > >> > >> This is a headless machine, could I have missed some licence agreement > step for it?? > >> > >> many thanks, > >> — Viv > >> > >> > >> On 25 Oct 2014, at 13:07, Jack Howarth <howarth.at.f...@gmail.com > <javascript:;>> wrote: > >> > >>> Viv, > >>> Do you have Oracle JDK installed? Depending on whether you have > already installed JRE 1.7 and 1.8, it can be download from... > >>> > >>> > http://www.oracle.com/technetwork/java/javase/downloads/jdk7-downloads-1880260.html > >>> > >>> or > >>> > >>> > http://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html > >>> > >>> I have only tested the against JDK7 so can't say how much breakage in > the packages using java will be > >>> caused by building fink against JDK8 instead. > >>> Jack > >>> > >>> On Sat, Oct 25, 2014 at 5:24 AM, Viv Kendon <v...@trellick.net > <javascript:;>> wrote: > >>> Hope this is enough of the relevant details: > >>> > >>> * building 'JavaGD_0.6-1.tar.gz' > >>> > >>> /bin/rm -rf /sw/src/fink.build/root-cran-javagd-r31-0.6-1-1 > >>> /bin/mkdir -p /sw/src/fink.build/root-cran-javagd-r31-0.6-1-1/sw > >>> /bin/mkdir -p /sw/src/fink.build/root-cran-javagd-r31-0.6-1-1/DEBIAN > >>> /usr/sbin/chown -R fink-bld:fink-bld > /sw/src/fink.build/root-cran-javagd-r31-0.6-1-1 > >>> sudo -u fink-bld [ENV] sh -c /tmp/fink.DVqRm > >>> /tmp/fink.SkoUV > >>> #!/bin/sh -ev > >>> BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R > >>> > >>> mkdir -p > /sw/src/fink.build/root-cran-javagd-r31-0.6-1-1/sw/lib/R/3.1/site-library > >>> pushd /sw/src/fink.build/cran-javagd-r31-0.6-1-1/JavaGD/.. && $BIN_R > --verbose CMD install > --library=/sw/src/fink.build/root-cran-javagd-r31-0.6-1-1/sw/lib/R/3.1/site-library > JavaGD > >>> /sw/src/fink.build/cran-javagd-r31-0.6-1-1 > /sw/src/fink.build/cran-javagd-r31-0.6-1-1/JavaGD > >>> install: illegal option -- - > >>> usage: install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode] > >>> [-o owner] file1 file2 > >>> install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode] > >>> [-o owner] file1 ... fileN directory > >>> install -d [-v] [-g group] [-m mode] [-o owner] directory ... > >>> ### execution of /tmp/fink.SkoUV failed, exit code 64 > >>> ### execution of /tmp/fink.DVqRm failed, exit code 64 > >>> > >>> > >>> Package manager version: 0.38.1 > >>> Distribution version: selfupdate-rsync Sat Oct 25 09:25:32 2014, 10.9, > x86_64 > >>> Trees: local/main stable/main > >>> Xcode.app: 6.0.1 > >>> Xcode command-line tools: 6.0.0.0.1.1410400753 > >>> Max. Fink build jobs: 18 > >>> > >>> Many thanks, > >>> — Viv > >>> > >> > >> > > > >
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