On Fri, Sep 18, 2015 at 11:42 PM, Sean Lake <odysseus9...@gmail.com> wrote:
> Ok, trying again to send to fink-users, not fink-core.
>
Sean,
You would have more luck discussing the issue with upstream (
http://math-atlas.sourceforge.net). The current build relies on its own
search for the architectural settings...
http://math-atlas.sourceforge.net/faq.html#srch
since the broken defaults are for an ancient darwin compiler configuration.
The expansion of the opcodes supported in the darwin system assembler now
is letting ATLAS compile for AVX support but the assembler has
compatibility issues with their syntax. The only simple approach would be
to attempt to use the settings found by an atlas build against Xcode 6.x
to construct a replacement architectural default file for darwin limited to
SSE2 and readjust the build to use that instead of detection. Even that is
not certain to work as it may well hit similar compatibility issues with
the assembly for SSE2.
Jack
Sean Lake
>
> > On Sep 18, 2015, at 20:29, Jack Howarth <howarth.at.f...@gmail.com>
> wrote:
> >
> >
> >
> > On Fri, Sep 18, 2015 at 11:05 PM, Sean Lake <odysseus9...@gmail.com>
> wrote:
> > I've attached the log. Perhaps you can find the source of the error in
> there.
> >
> > Thanks,
> > Sean Lake
> >
> >
> > Sean,
> > This is unlikely to be fixed anytime soon. The atlas build has
> always be very fragile and the new clang assembler is now allowing it to
> explore using the AVX opcodes. Previously on darwin the legacy GNU based
> assembler was limited to SSE3 opcodes. Notice that the errors are starting
> here...
> >
> >
> /sw/src/fink.build/atlas-3.10.2-2/darwin_bld/../ATLAS//src/blas/level3/kernel/ATL_trsmKL_rk4.c:39:9:
> warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi]
> > rB00 = _mm256_broadcast_pd((void*)pB0); /* B10 B00 B10
> B00 */
> > ^
> >
> /sw/src/fink.build/atlas-3.10.2-2/darwin_bld/../ATLAS//src/blas/level3/kernel/ATL_trsmKR_rk4.c:
> In function 'ATL_rk4':
> >
> /sw/src/fink.build/atlas-3.10.2-2/darwin_bld/../ATLAS//src/blas/level3/kernel/ATL_trsmKR_rk4.c:39:9:
> warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi]
> > rB00 = _mm256_broadcast_pd((void*)pB0); /* B10 B00 B10
> B00 */
> > ^
> > In file included from
> /sw/lib/gcc5/lib/gcc/x86_64-apple-darwin14.5.0/5.2.0/include/immintrin.h:41:0,
> > from
> /sw/src/fink.build/atlas-3.10.2-2/darwin_bld/../ATLAS//src/blas/level3/kernel/ATL_trsmKL_rk4.c:14:
> >
> /sw/lib/gcc5/lib/gcc/x86_64-apple-darwin14.5.0/5.2.0/include/avxintrin.h:834:1:
> error: inlining failed in call to always_inline '_mm256_load_pd': target
> specific option mismatch
> > _mm256_load_pd (double const *__P)
> > ^
> >
> > Upstream will have to revise their in-line assembly code to be
> compatible with the clang-based assembler or they will have to provide a
> mechanism to override the selection of the AVX-opcodes. Note that the
> legacy GNU-based assembler never allowed the optimizations to expand
> beyond...
> >
> > -DATL_ARCH_Corei1 -DATL_CPUMHZ=2260 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1
> >
> > but the new clang-based assembler is allowing totally new optimization
> levels to be attempted.
> >
> > -DATL_ARCH_Corei3 -DATL_CPUMHZ=3500 -DATL_AVXMAC -DATL_AVX -DATL_SSE3
> -DATL_SSE2 -DATL_SSE1
> >
> > Jack
> >
> > > On Sep 18, 2015, at 19:16, Jack Howarth <howarth.at.f...@gmail.com>
> wrote:
> > >
> > >
> > >
> > > On Fri, Sep 18, 2015 at 10:14 PM, Sean Lake <odysseus9...@gmail.com>
> wrote:
> > > Same error.
> > >
> > > Then I am out of ideas here.
> > >
> > > Thanks,
> > > Sean
> > >
> > > > On Sep 18, 2015, at 18:36, Jack Howarth <howarth.at.f...@gmail.com>
> wrote:
> > > >
> > > >
> > > >
> > > > On Fri, Sep 18, 2015 at 9:35 PM, Sean Lake <odysseus9...@gmail.com>
> wrote:
> > > > fink's make is installed. I also have cmake.
> > > >
> > > > i make 4.1-2 Software build tool
> > > > i cmake 3.3.0-1 Cross-platform Make
> > > >
> > > > Try it again without fink make installed.
> > > >
> > > >
> > > > > On Sep 18, 2015, at 18:33, Jack Howarth <howarth.at.f...@gmail.com>
> wrote:
> > > > >
> > > > >
> > > > >
> > > > > On Fri, Sep 18, 2015 at 9:17 PM, Sean Lake <odysseus9...@gmail.com>
> wrote:
> > > > >
> > > > > > On Sep 18, 2015, at 17:22, Jack Howarth <
> howarth.at.f...@gmail.com> wrote:
> > > > > >
> > > > > >
> > > > > >
> > > > > > On Fri, Sep 18, 2015 at 8:12 PM, Sean Lake <
> odysseus9...@gmail.com> wrote:
> > > > > > Hello all,
> > > > > >
> > > > > > Not sure why the install is failing on this one.
> > > > > >
> > > > > > Sean
> > > > > >
> > > > > > Error text:
> > > > > > make[1]: Entering directory
> '/sw/src/fink.build/atlas-3.10.2-2/darwin_bld'
> > > > > > cp /sw/src/fink.build/atlas-3.10.2-2/darwin_bld/lib/libatlas.a
> /sw/src/fink.build/root-atlas-3.10.2-2/sw/lib/.
> > > > > > cp /sw/src/fink.build/atlas-3.10.2-2/darwin_bld/lib/libcblas.a
> /sw/src/fink.build/root-atlas-3.10.2-2/sw/lib/.
> > > > > > cp /sw/src/fink.build/atlas-3.10.2-2/darwin_bld/lib/liblapack.a
> /sw/src/fink.build/root-atlas-3.10.2-2/sw/lib/.
> > > > > > cp:
> /sw/src/fink.build/atlas-3.10.2-2/darwin_bld/lib/liblapack.a: No such file
> or directory
> > > > > > Make.top:658: recipe for target 'install_lib' failed
> > > > > > make[1]: *** [install_lib] Error 1
> > > > > >
> > > > > >
> > > > > > Was fink make installed during this build?
> > > > >
> > > > > I don't believe so. I ran the command:
> > > > > sudo fink install atlas atlas-shlibs
> > > > >
> > > > > I get the same error when I run:
> > > > > sudo fink rebuild atlas atlas-shlibs
> > > > >
> > > > > Does it behave differently if fink make is installed?
> > > > >
> > > > >
> > > > > >
> > > > > > System info:
> > > > > > Package manager version: 0.38.7
> > > > > > Distribution version: selfupdate-rsync Fri Sep 18 16:34:04 2015,
> 10.10, x86_64
> > > > > > Trees: local/main stable/main stable/crypto
> > > > > > Xcode.app: 7.0
> > > > > > Xcode command-line tools: 7.0.0.0.1.1441394355
> > > > > > atlas-3.10.2-2 is set to build with only one job.
> > > >
> > > >
> > >
> > >
> >
> >
> >
>
>
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