Hi Alex,
Many thanks for taking care of this so quickly.
Just did a selfupdate on Fink but am getting the same issue when I run:
fink install numeric-py27
Do you know how long the change will take to propagate?
FYI, I’ve attached output from my last attempt below.
All the best, and many thanks!
—Buz
> On Nov 1, 2015, at 6:35 PM, Alexander Hansen <alexanderk.han...@gmail.com
> <mailto:alexanderk.han...@gmail.com>> wrote:
>
>>
>> On Nov 1, 2015, at 15:11, Buz Barstow <buzbars...@gmail.com
>> <mailto:buzbars...@gmail.com>> wrote:
>>
>> Hi all,
>>
>> I’m trying to install the simplecv package on OSX El Capitan.
>>
>> As part of this, I need to install the pygame-py27 package. However, this
>> package needs the numeric-py27 package, which fails to install due to the
>> lack of the vecLib framework in later versions of OSX.
>>
>> Does anyone know of a work around?
>>
>> All the best, and many thanks,
>>
>> —Buz
>> ———————————————————————————————————————
>> _______________________________________________
>
> I just switched numeric to use Accelerate instead of vecLib.
>
> Look for numeric-py27-24-4 after selfupdating.
>
> --
> Alexander Hansen, Ph.D.
> Fink User Liaison
apollo8:~ buz$ fink selfupdate
/usr/bin/rsync -az -q
rsync://distfiles.master.finkmirrors.net/finkinfo//TIMESTAMP
/sw/fink/TIMESTAMP.tmp
I will now run the rsync command to retrieve the latest package descriptions.
/usr/bin/rsync -rtz --delete-after --delete -q --include='10.9-libcxx/'
--include='10.9-libcxx/stable/' --include='10.9-libcxx/stable/main/'
--include='10.9-libcxx/stable/main/finkinfo/'
--include='10.9-libcxx/stable/main/finkinfo/*/'
--include='10.9-libcxx/stable/main/finkinfo/*'
--include='10.9-libcxx/stable/main/finkinfo/**/*' --include='VERSION'
--include='DISTRIBUTION' --include='README' --exclude='**'
'rsync://distfiles.master.finkmirrors.net/finkinfo' '/sw/fink/'
Downloading the indexes of available packages in the binary distribution.
/sw/bin/apt-get-lockwait -q update
Hit http://bindist.finkmirrors.net stable/main Packages
Hit http://bindist.finkmirrors.net stable/main Release
Reading Package Lists...
Building Dependency Tree...
Scanning package description files..........
Information about 8806 packages read in 0 seconds.
No packages to install.
The core packages have been updated. You should now update the other packages
using commands like 'fink update-all'.
apollo8:~ buz$ fink install numeric-py27
Information about 8806 packages read in 0 seconds.
The following package will be installed or updated:
numeric-py27
Setting runtime build-lock...
dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-numeric-py27-24.2-3
/sw/src/fink.build
dpkg-deb: building package `fink-buildlock-numeric-py27-24.2-3' in
`/sw/src/fink.build/fink-buildlock-numeric-py27-24.2-3_2015.11.01-18.47.12_darwin-x86_64.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i
/sw/src/fink.build/fink-buildlock-numeric-py27-24.2-3_2015.11.01-18.47.12_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-numeric-py27-24.2-3.
(Reading database ... 201906 files and directories currently installed.)
Unpacking fink-buildlock-numeric-py27-24.2-3 (from
.../fink-buildlock-numeric-py27-24.2-3_2015.11.01-18.47.12_darwin-x86_64.deb)
...
Setting up fink-buildlock-numeric-py27-24.2-3 (2015.11.01-18.47.12) ...
sudo -u fink-bld [ENV] sh -c /tmp/fink.SIl2E
env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xf
/sw/src/Numeric-24.2.tar.gz
sudo -u fink-bld [ENV] sh -c /tmp/fink.CMSQK
[ -r /sw/fink/dists/stable/main/finkinfo/sci/numeric-py.patch ]
sudo -u fink-bld [ENV] sh -c /tmp/fink.ThGi1
/usr/bin/patch -p1 < /sw/fink/dists/stable/main/finkinfo/sci/numeric-py.patch
patching file setup.py
Hunk #1 succeeded at 89 (offset 6 lines).
Hunk #2 succeeded at 144 (offset 4 lines).
Hunk #3 succeeded at 163 (offset 4 lines).
Hunk #4 succeeded at 177 (offset 4 lines).
patching file Packages/RNG/Src/ranf.c
sudo -u fink-bld [ENV] sh -c /tmp/fink.AxuFt
/sw/bin/python2.7 setup.py build
WARNING: '' not a valid package name; please use only.-separated package names
in setup.py
running build
running build_py
creating build
creating build/lib.macosx-10.11-x86_64-2.7
copying Lib/ArrayPrinter.py -> build/lib.macosx-10.11-x86_64-2.7
copying Lib/LinearAlgebra.py -> build/lib.macosx-10.11-x86_64-2.7
copying Lib/Matrix.py -> build/lib.macosx-10.11-x86_64-2.7
copying Lib/MLab.py -> build/lib.macosx-10.11-x86_64-2.7
copying Lib/Numeric.py -> build/lib.macosx-10.11-x86_64-2.7
copying Lib/numeric_version.py -> build/lib.macosx-10.11-x86_64-2.7
copying Lib/Precision.py -> build/lib.macosx-10.11-x86_64-2.7
copying Lib/RandomArray.py -> build/lib.macosx-10.11-x86_64-2.7
copying Lib/UserArray.py -> build/lib.macosx-10.11-x86_64-2.7
creating build/lib.macosx-10.11-x86_64-2.7/FFT
copying Packages/FFT/Lib/__init__.py -> build/lib.macosx-10.11-x86_64-2.7/FFT
copying Packages/FFT/Lib/FFT.py -> build/lib.macosx-10.11-x86_64-2.7/FFT
creating build/lib.macosx-10.11-x86_64-2.7/MA
copying Packages/MA/Lib/__init__.py -> build/lib.macosx-10.11-x86_64-2.7/MA
copying Packages/MA/Lib/MA.py -> build/lib.macosx-10.11-x86_64-2.7/MA
copying Packages/MA/Lib/MA_version.py -> build/lib.macosx-10.11-x86_64-2.7/MA
creating build/lib.macosx-10.11-x86_64-2.7/RNG
copying Packages/RNG/Lib/__init__.py -> build/lib.macosx-10.11-x86_64-2.7/RNG
copying Packages/RNG/Lib/Statistics.py -> build/lib.macosx-10.11-x86_64-2.7/RNG
creating build/lib.macosx-10.11-x86_64-2.7/dotblas
copying Packages/dotblas/dotblas/__init__.py ->
build/lib.macosx-10.11-x86_64-2.7/dotblas
creating build/lib.macosx-10.11-x86_64-2.7/Numeric_headers
copying Include/__init__.py -> build/lib.macosx-10.11-x86_64-2.7/Numeric_headers
creating build/lib.macosx-10.11-x86_64-2.7/Numeric_headers/Numeric
copying Include/Numeric/arrayobject.h ->
build/lib.macosx-10.11-x86_64-2.7/Numeric_headers/Numeric
copying Include/Numeric/f2c.h ->
build/lib.macosx-10.11-x86_64-2.7/Numeric_headers/Numeric
copying Include/Numeric/ranlib.h ->
build/lib.macosx-10.11-x86_64-2.7/Numeric_headers/Numeric
copying Include/Numeric/ufuncobject.h ->
build/lib.macosx-10.11-x86_64-2.7/Numeric_headers/Numeric
running build_ext
building '_numpy' extension
creating build/temp.macosx-10.11-x86_64-2.7
creating build/temp.macosx-10.11-x86_64-2.7/Src
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall
-Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include
-IPackages/RNG/Include -I/sw/include/python2.7 -c Src/_numpymodule.c -o
build/temp.macosx-10.11-x86_64-2.7/Src/_numpymodule.o
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall
-Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include
-IPackages/RNG/Include -I/sw/include/python2.7 -c Src/arrayobject.c -o
build/temp.macosx-10.11-x86_64-2.7/Src/arrayobject.o
Src/arrayobject.c:180:39: warning: equality comparison with extraneous
parentheses [-Wparentheses-equality]
if (((*dest_strides)[*dest_nd-1] == *elsize)) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
Src/arrayobject.c:180:39: note: remove extraneous parentheses around the
comparison to silence this warning
if (((*dest_strides)[*dest_nd-1] == *elsize)) {
~ ^ ~
Src/arrayobject.c:180:39: note: use '=' to turn this equality comparison into
an assignment
if (((*dest_strides)[*dest_nd-1] == *elsize)) {
^~
=
Src/arrayobject.c:527:21: warning: comparison of unsigned expression < 0 is
always false [-Wtautological-compare]
} else if (newsize < 0) {
~~~~~~~ ^ ~
Src/arrayobject.c:1101:5: warning: incompatible pointer types initializing
'lenfunc' (aka 'Py_ssize_t (*)(PyObject *)') with an expression of
type 'inquiry' (aka 'int (*)(PyObject *)') [-Wincompatible-pointer-types]
(inquiry)array_length, /*mp_length*/
^~~~~~~~~~~~~~~~~~~~~
Src/arrayobject.c:1186:5: warning: incompatible pointer types initializing
'readbufferproc' (aka 'Py_ssize_t (*)(PyObject *, Py_ssize_t, void
**)') with an expression of type 'getreadbufferproc' (aka 'int
(*)(PyObject *, int, void **)') [-Wincompatible-pointer-types]
(getreadbufferproc)array_getreadbuf, /*bf_getreadbuffer*/
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Src/arrayobject.c:1187:5: warning: incompatible pointer types initializing
'writebufferproc' (aka 'Py_ssize_t (*)(PyObject *, Py_ssize_t, void
**)') with an expression of type 'getwritebufferproc' (aka 'int
(*)(PyObject *, int, void **)') [-Wincompatible-pointer-types]
(getwritebufferproc)array_getwritebuf, /*bf_getwritebuffer*/
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Src/arrayobject.c:1188:5: warning: incompatible pointer types initializing
'segcountproc' (aka 'Py_ssize_t (*)(PyObject *, Py_ssize_t *)') with
an expression of type 'getsegcountproc' (aka 'int (*)(PyObject *, int
*)') [-Wincompatible-pointer-types]
(getsegcountproc)array_getsegcount, /*bf_getsegcount*/
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Src/arrayobject.c:1189:5: warning: incompatible pointer types initializing
'charbufferproc' (aka 'Py_ssize_t (*)(PyObject *, Py_ssize_t, char
**)') with an expression of type 'getcharbufferproc' (aka 'int
(*)(PyObject *, int, char **)') [-Wincompatible-pointer-types]
(getcharbufferproc)array_getcharbuf, /*bf_getcharbuffer*/
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Src/arrayobject.c:1637:5: warning: incompatible pointer types initializing
'lenfunc' (aka 'Py_ssize_t (*)(PyObject *)') with an expression of
type 'inquiry' (aka 'int (*)(PyObject *)') [-Wincompatible-pointer-types]
(inquiry)array_length, /*sq_length*/
^~~~~~~~~~~~~~~~~~~~~
Src/arrayobject.c:1639:5: warning: incompatible pointer types initializing
'ssizeargfunc' (aka 'PyObject *(*)(PyObject *, Py_ssize_t)') with an
expression of type 'intargfunc' (aka 'PyObject *(*)(PyObject *, int)')
[-Wincompatible-pointer-types]
(intargfunc)NULL, /*nb_multiply, repeat is numeric multiply*/
^~~~~~~~~~~~~~~~
Src/arrayobject.c:1640:5: warning: incompatible pointer types initializing
'ssizeargfunc' (aka 'PyObject *(*)(PyObject *, Py_ssize_t)') with an
expression of type 'intargfunc' (aka 'PyObject *(*)(PyObject *, int)')
[-Wincompatible-pointer-types]
(intargfunc)array_item_nice, /*sq_item*/
^~~~~~~~~~~~~~~~~~~~~~~~~~~
Src/arrayobject.c:1641:5: warning: incompatible pointer types initializing
'ssizessizeargfunc' (aka 'PyObject *(*)(PyObject *, Py_ssize_t,
Py_ssize_t)') with an expression of type 'intintargfunc' (aka 'PyObject
*(*)(PyObject *, int, int)') [-Wincompatible-pointer-types]
(intintargfunc)array_slice, /*sq_slice*/
^~~~~~~~~~~~~~~~~~~~~~~~~~
Src/arrayobject.c:1642:5: warning: incompatible pointer types initializing
'ssizeobjargproc' (aka 'int (*)(PyObject *, Py_ssize_t, PyObject *)')
with an expression of type 'intobjargproc' (aka 'int (*)(PyObject *, int,
PyObject *)') [-Wincompatible-pointer-types]
(intobjargproc)array_ass_item, /*sq_ass_item*/
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Src/arrayobject.c:1643:5: warning: incompatible pointer types initializing
'ssizessizeobjargproc' (aka 'int (*)(PyObject *, Py_ssize_t,
Py_ssize_t, PyObject *)') with an expression of type 'intintobjargproc'
(aka 'int (*)(PyObject *, int, int, PyObject *)')
[-Wincompatible-pointer-types]
(intintobjargproc)array_ass_slice, /*sq_ass_slice*/
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Src/arrayobject.c:1639:6: warning: 'intargfunc' is deprecated
[-Wdeprecated-declarations]
(intargfunc)NULL, /*nb_multiply, repeat is numeric multiply*/
^
/sw/include/python2.7/object.h:139:21: note: 'intargfunc' has been explicitly
marked deprecated here
typedef PyObject *(*intargfunc)(PyObject *, int) Py_DEPRECATED(2.5);
^
Src/arrayobject.c:1640:6: warning: 'intargfunc' is deprecated
[-Wdeprecated-declarations]
(intargfunc)array_item_nice, /*sq_item*/
^
/sw/include/python2.7/object.h:139:21: note: 'intargfunc' has been explicitly
marked deprecated here
typedef PyObject *(*intargfunc)(PyObject *, int) Py_DEPRECATED(2.5);
^
Src/arrayobject.c:1641:6: warning: 'intintargfunc' is deprecated
[-Wdeprecated-declarations]
(intintargfunc)array_slice, /*sq_slice*/
^
/sw/include/python2.7/object.h:140:21: note: 'intintargfunc' has been
explicitly marked deprecated here
typedef PyObject *(*intintargfunc)(PyObject *, int, int) Py_DEPRECATED(2.5);
^
Src/arrayobject.c:2900:10: warning: incompatible pointer types passing 'int *'
to parameter of type 'Py_ssize_t *' (aka 'long *')
[-Wincompatible-pointer-types]
&buffer_len);
^~~~~~~~~~~
/sw/include/python2.7/abstract.h:519:56: note: passing argument to parameter
'buffer_len' here
Py_ssize_t *buffer_len);
^
17 warnings generated.
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall
-Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include
-IPackages/RNG/Include -I/sw/include/python2.7 -c Src/ufuncobject.c -o
build/temp.macosx-10.11-x86_64-2.7/Src/ufuncobject.o
gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib
-L/sw/lib -I/sw/include build/temp.macosx-10.11-x86_64-2.7/Src/_numpymodule.o
build/temp.macosx-10.11-x86_64-2.7/Src/arrayobject.o
build/temp.macosx-10.11-x86_64-2.7/Src/ufuncobject.o -L/sw/lib -o
build/lib.macosx-10.11-x86_64-2.7/_numpy.so
building 'multiarray' extension
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall
-Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include
-IPackages/RNG/Include -I/sw/include/python2.7 -c Src/multiarraymodule.c -o
build/temp.macosx-10.11-x86_64-2.7/Src/multiarraymodule.o
Src/multiarraymodule.c:1124:19: warning: using the result of an assignment as a
condition without parentheses [-Wparentheses]
if (savespace |= 0 || (PyArray_Check(op) && PyArray_ISSPACESAVER(op)))
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Src/multiarraymodule.c:1124:19: note: place parentheses around the assignment
to silence this warning
if (savespace |= 0 || (PyArray_Check(op) && PyArray_ISSPACESAVER(op)))
^
( )
Src/multiarraymodule.c:1124:19: note: use '!=' to turn this compound assignment
into an inequality comparison
if (savespace |= 0 || (PyArray_Check(op) && PyArray_ISSPACESAVER(op)))
^~
!=
1 warning generated.
gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib
-L/sw/lib -I/sw/include
build/temp.macosx-10.11-x86_64-2.7/Src/multiarraymodule.o -L/sw/lib -o
build/lib.macosx-10.11-x86_64-2.7/multiarray.so
building 'umath' extension
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall
-Wstrict-prototypes -I/sw/include -DHAVE_INVERSE_HYPERBOLIC=1 -IInclude
-IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c
Src/umathmodule.c -o build/temp.macosx-10.11-x86_64-2.7/Src/umathmodule.o
gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib
-L/sw/lib -I/sw/include build/temp.macosx-10.11-x86_64-2.7/Src/umathmodule.o
-L/sw/lib -lm -o build/lib.macosx-10.11-x86_64-2.7/umath.so
building 'arrayfns' extension
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall
-Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include
-IPackages/RNG/Include -I/sw/include/python2.7 -c Src/arrayfnsmodule.c -o
build/temp.macosx-10.11-x86_64-2.7/Src/arrayfnsmodule.o
gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib
-L/sw/lib -I/sw/include build/temp.macosx-10.11-x86_64-2.7/Src/arrayfnsmodule.o
-L/sw/lib -o build/lib.macosx-10.11-x86_64-2.7/arrayfns.so
building 'ranlib' extension
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall
-Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include
-IPackages/RNG/Include -I/sw/include/python2.7 -c Src/ranlibmodule.c -o
build/temp.macosx-10.11-x86_64-2.7/Src/ranlibmodule.o
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall
-Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include
-IPackages/RNG/Include -I/sw/include/python2.7 -c Src/ranlib.c -o
build/temp.macosx-10.11-x86_64-2.7/Src/ranlib.o
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall
-Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include
-IPackages/RNG/Include -I/sw/include/python2.7 -c Src/com.c -o
build/temp.macosx-10.11-x86_64-2.7/Src/com.o
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall
-Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include
-IPackages/RNG/Include -I/sw/include/python2.7 -c Src/linpack.c -o
build/temp.macosx-10.11-x86_64-2.7/Src/linpack.o
gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib
-L/sw/lib -I/sw/include build/temp.macosx-10.11-x86_64-2.7/Src/ranlibmodule.o
build/temp.macosx-10.11-x86_64-2.7/Src/ranlib.o
build/temp.macosx-10.11-x86_64-2.7/Src/com.o
build/temp.macosx-10.11-x86_64-2.7/Src/linpack.o -L/sw/lib -o
build/lib.macosx-10.11-x86_64-2.7/ranlib.so
building 'lapack_lite' extension
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall
-Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include
-IPackages/RNG/Include -I/sw/include/python2.7 -c Src/lapack_litemodule.c -o
build/temp.macosx-10.11-x86_64-2.7/Src/lapack_litemodule.o
gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib
-L/sw/lib -I/sw/include
build/temp.macosx-10.11-x86_64-2.7/Src/lapack_litemodule.o -L/sw/lib -o
build/lib.macosx-10.11-x86_64-2.7/lapack_lite.so -framework vecLib
ld: framework not found vecLib
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'gcc' failed with exit status 1
### execution of /sw/bin/python2.7 failed, exit code 1
### execution of /tmp/fink.AxuFt failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-numeric-py27-24.2-3
(Reading database ... 201907 files and directories currently installed.)
Removing fink-buildlock-numeric-py27-24.2-3 ...
Failed: phase compiling: numeric-py27-24.2-3 failed
Before reporting any errors, please run "fink selfupdate" and try again.
Also try using "fink configure" to set your maximum build jobs to 1 and
attempt to build the package again.
If you continue to have issues, please check to see if the FAQ on Fink's
website solves the problem. If not, ask on one (not both, please) of
these mailing lists:
The Fink Users List <fink-users@lists.sourceforge.net>
The Fink Beginners List <fink-beginn...@lists.sourceforge.net>.
Please try to include the complete error message in your report. This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.
Also include the following system information:
Package manager version: 0.39.2
Distribution version: selfupdate-rsync Sun Nov 1 18:47:03 2015, 10.11, x86_64
Trees: local/main stable/main
Xcode.app: 7.1
Xcode command-line tools: 7.1.0.0.1.1444952191
Max. Fink build jobs: 8------------------------------------------------------------------------------
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