Weird, I used Jack's files and it worked on Sierra. Fighting now to get
openssl (another email submitted).
Many thanks,
Alan
On 1 October 2016 at 02:41, Derek Homeier <
de...@astro.physik.uni-goettingen.de> wrote:
> Jack,
>
> > On 30 Sep 2016, at 8:23 pm, Jack Howarth <howarth.at.f...@gmail.com>
> wrote:
> >
> > Does the attached guile20 packaging for the 2.0.12 release work?
> Both MacPorts and Homebrew are building on Sierra with the same patch using
> the 2.0.12 release.
> > Jack
> > ps This packaging works fine here on El Capitan with Xcode 8.1 beta
> (don't have hardware for Sierra).
> >
> got my MacBook upgraded to Sierra now, and now the build in fact defaults
> to ac_cv_func_clock_gettime=yes,
> which fails again with
>
> CC libguile_2.0_la-stime.lo
> ../../libguile/stime.c:119:3: warning: implicit declaration of function
> 'clock_gettime' is invalid in C99 [-Wimplicit-function-declaration]
> clock_gettime (CLOCK_REALTIME, &ts);
> ^
> ../../libguile/stime.c:119:18: error: use of undeclared identifier
> 'CLOCK_REALTIME'
> clock_gettime (CLOCK_REALTIME, &ts);
> ^
> ../../libguile/stime.c:828:22: error: use of undeclared identifier
> 'CLOCK_REALTIME'
> if (clock_gettime (CLOCK_REALTIME, &posix_real_time_base) == 0)
>
> Adding ac_cv_func_clock_gettime=no to ConfigParams instead lets the build
> succeed.
> I am a bit confused about my Xcode installation now, though, because after
> the failure
> with the first variant fink tells me:
>
> Also include the following system information:
> Package manager version: 0.41.0
> Distribution version: selfupdate-rsync Fri Sep 30 23:54:16 2016, 10.12,
> x86_64
> Trees: stable/main local/main local/injected unstable/main
> Xcode.app: 8.0
> Xcode command-line tools: 7.3.1.0.1.1461711523
> Max. Fink build jobs: 1
>
> However according to AppStore I have installed both the update to
> “Command Line Tools (OS X 10.11) for Xcode Version 7.3” and
> “Command Line Tools (macOS Sierra version 10.12) for Xcode Version 8.0”
>
> and gcc -v
> Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr
> --with-gxx-include-dir=/usr/include/c++/4.2.1
> Apple LLVM version 8.0.0 (clang-800.0.38)
>
> xcode-select does not offer any useful options here.
>
> I should perhaps also note that updating llvm-gcc42 failed with this
> rather nondescriptive error:
>
> Adding multilib support to Makefile in /scratch.noindex/fink.build/
> llvm-gcc42-2336.11-37/objroot/src/libiberty
> with_multisubdir=i386
> make[2]: *** [all] Error 2
> + exit 1
> make[1]: *** [llvmgcc42] Error 1
> make: *** [install] Error 2
>
>
> Anyway, with just the modified ConfigParams guile20 seems to work both on
> El Capitan and Sierra,
> and I was also able to rebuild ffmpeg with the new guile20 installed…
>
> Cheers,
> Derek
> >
> > On Fri, Sep 30, 2016 at 10:30 AM, Derek Homeier <de...@astro.physik.uni-
> goettingen.de> wrote:
> > On 30 Sep 2016, at 12:02 pm, Alan <alanwil...@gmail.com> wrote:
> > >
> > > Well, I gave a try, I copied from stable to local and appended
> > >
> > > /sw/fink/dists/local/main/finkinfo/languages/guile20.patch
> > >
> > > with lines from https://gist.github.com/rahulg/
> baa500e84136f0965e9ade2fb36b90ba
> > >
> > > but, alas, it didn't work.
> > >
> > That patch file is outdated and no longer used; you'd need to replace it
> completely with the new
> > patch and then modify the info file to use it again in the internal
> patch script it is using now.
> > But note that this issue has been discussed on the list before:
> >
> > > On 15 Aug 2016, at 8:35 pm, Jack Howarth <howarth.at.f...@gmail.com>
> wrote:
> > >
> > > Alternatively, rather than applying that ugly unreviewed patch, we
> could probably just pass ac_cv_func_clock_gettime=no to configure to avoid
> the new system calls until upstream catches up with the deviations in the
> Mac OS X implementation.
> > > Jack
>
>
--
Alan Wilter SOUSA da SILVA, DSc
Senior Bioinformatician, UniProt
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
Tel: +44 (0)1223 494588
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