On Apr 2, 2013, at 3:50 AM, Ali Akbar Eftekhari wrote:

> Thanks a lot for your reply. I tried to run the new script with --scipy
> or --trilinos but I got this error: http://pastebin.com/hkPv2hTi

The error you are getting with cylindrical grids was reported about two weeks 
ago 

  http://article.gmane.org/gmane.comp.python.fipy/2971

and was just fixed a couple of days ago:

> On Mar 22, 2013, at 9:52 AM, Jonathan Guyer wrote:
> 
> This issue has been fixed on the `develop` branch. See 
> http://matforge.org/fipy/ticket/513 and 
> http://matforge.org/fipy/changeset/fe00adaf9e/fipy.

You will need to update your FiPy installation from our git repository. 
Instructions are now here:

  http://www.ctcms.nist.gov/fipy/INSTALLATION.html#git-usage



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