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https://issues.apache.org/jira/browse/FOP-2728?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16089015#comment-16089015
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Glenn Adams commented on FOP-2728:
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You should focus on creating a (MUCH simpler) version of simple.fo and use that 
as input to FOP for testing purposes so you can bypass all docbook 
pre-processing via XSLT. Make sure you specify writing-mode="rl" or "rl-tb" on 
fo:page-sequence, not fo:root.

Regarding font support, you have it backwards. The primary support is for 
OpenType, and only OT tables are supported for complex script processing.

> Persian (Farsi) output problem with FOP
> ---------------------------------------
>
>                 Key: FOP-2728
>                 URL: https://issues.apache.org/jira/browse/FOP-2728
>             Project: FOP
>          Issue Type: Bug
>          Components: renderer/pdf
>    Affects Versions: 2.1
>         Environment: Ubuntu 16.04 with xmlto 0.0.28
>            Reporter: Navid Emami
>              Labels: drupal
>         Attachments: mkebooks.sh, pdf-farsi.xsl, sample-output-final.zip, 
> sample-output.zip
>
>
> We are having trouble making Persian (Farsi) language output with FOP.
> We are using the *xmlto* script with the --with-fop option to convert a 
> DocBook file to PDF using FOP, which uses XSLT to first make a FO file, and 
> then FOP to convert to PDF. We used the --noclean option to capture the 
> intermediate FO XML file.
> We have verified that the Persian (Farsi) characters are readable in the 
> DocBook and FO files. However, when we generate the PDF, the output is not 
> readable. There are both _joined_ and _separated_ letters in Persian (Farsi) 
> language but the output in PDF format has just separated ones.
> Note that there are some font issues in the PDF output as well -- missing 
> glyphs -- those show as # characters, and are in the chapter/section 
> headings. However, the main body of the text has no # characters, and it 
> still has this problem.
> *Attachments:*
> * sample-output.zip contains small.docbook, small.fo, small.epub and 
> small.pdf. The final output of PDF should be similar to EPUB.
> * sample-output-full.zip contains guide.epub and guide.pdf which are the 
> complete documents but with wrong rendering of characters in PDF.



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