Currently fpdoc stores many options in the project files, but this can
cause problems. Once a boolean option is stored as True, e.g.
<option name="hide-protected" value="true"/>
it cannot be turned off by a different commandline option :-(
This raises the question, which options should be stored in project
files at all, or how the stored options can be overridden by commandline
options. The simplest solution would be another commandline option
--ignore-project-options (much shorter, if possible), that forces to
ignore at least all boolean options read from a project file.
DoDi
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