>Number: 156059 >Category: misc >Synopsis: Update port: science/massxpert up to 2.4.3 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Wed Mar 30 13:10:10 UTC 2011 >Closed-Date: >Last-Modified: >Originator: Gvozdikov Veniamin >Release: FreeBSD 8.2-RELEASE >Organization: >Environment: FreeBSD LSD.zlonet.ru 8.2-RELEASE FreeBSD 8.2-RELEASE #0: Fri Feb 18 02:24:46 UTC 2011 [email protected]:/usr/obj/usr/src/sys/GENERIC i386 >Description: New version. Fixed a problem with considering that the lightest isotope was necessarily the most abundant isotope. In fact this is true for the main chemical elements in biological matter, but can be not true for other chemical elements. This fix will only matter to people using chemical elements of which the most abundant isotope is not the lightest one. Fixed a bug that crashed the program when the user would click (on the sequence editor) left of first monomer vignette. Added feature: when running the mz calculations dialog from the sequence editor window, the masses are automatically set in the dialog window. Added ion charge proton to the formula of the z fragmentation specification. Rewrote the Formula's elementalComposition() so that the order of the atoms is in the CHNO->alphabetic conventional order. >How-To-Repeat:
>Fix: diff -up massxpert.orig/Makefile massxpert/Makefile --- massxpert.orig/Makefile 2011-03-30 21:00:30.000000000 +0800 +++ massxpert/Makefile 2011-03-30 16:16:38.000000000 +0800 @@ -6,14 +6,15 @@ # PORTNAME= massxpert -PORTVERSION= 2.3.6 -PORTREVISION= 1 +PORTVERSION= 2.4.3 CATEGORIES= science MASTER_SITES= http://download.tuxfamily.org/massxpert/source/ MAINTAINER= [email protected] COMMENT= The massXpert software for (bio)chemists +LICENSE= GPLv3 + USE_QT_VER= 4 USE_CMAKE= yes QT_COMPONENTS= gui xml rcc_build qmake_build uic_build moc_build \ diff -up massxpert.orig/distinfo massxpert/distinfo --- massxpert.orig/distinfo 2011-03-30 21:00:30.000000000 +0800 +++ massxpert/distinfo 2011-03-30 16:15:50.000000000 +0800 @@ -1,3 +1,2 @@ -MD5 (massxpert-2.3.6.tar.gz) = e51cf36f01e78cf07a71e33a8e0f8ad7 -SHA256 (massxpert-2.3.6.tar.gz) = 9c28de0eb45c027551b52b865bae4a9cdcc874869cefadb3fe61a71e391f49e4 -SIZE (massxpert-2.3.6.tar.gz) = 14197098 +SHA256 (massxpert-2.4.3.tar.gz) = 2c8cb51b9d81c2ddf8a1f212d067d64dab066756a4b0c15e01ad6071c2741702 +SIZE (massxpert-2.4.3.tar.gz) = 14208974 Common subdirectories: massxpert.orig/files and massxpert/files diff -up massxpert.orig/pkg-plist massxpert/pkg-plist --- massxpert.orig/pkg-plist 2011-03-30 21:00:30.000000000 +0800 +++ massxpert/pkg-plist 2011-03-30 17:41:27.000000000 +0800 @@ -198,6 +198,8 @@ share/applications/massxpert.desktop %%DATADIR%%/pol-seqs/protein-3-letters.mxp %%DATADIR%%/pol-seqs/tev-protease-his-tag.mxp %%DATADIR%%/pol-seqs/yellow-fluorescent-protein.mxp +%%DATADIR%%/pol-seqs/insulin-a-ox.mxp +%%DATADIR%%/pol-seqs/insulin-b-ox.mxp %%DATADIR%%/dictionaries/codon-to-protein-1.dic %%DATADIR%%/dictionaries/codon-to-protein-3.dic %%DATADIR%%/dictionaries/pdb-protein-to-mxp.dic >Release-Note: >Audit-Trail: >Unformatted: _______________________________________________ [email protected] mailing list http://lists.freebsd.org/mailman/listinfo/freebsd-bugs To unsubscribe, send any mail to "[email protected]"
