You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     y...@freebsd.org
Log URL:        
https://pkg-status.freebsd.org/ampere3/data/132arm64-default/d5268d5f7157/logs/votca-2022.1_1.log
Build URL:      
https://pkg-status.freebsd.org/ampere3/build.html?mastername=132arm64-default&build=d5268d5f7157
Log:

=>> Building science/votca
build started at Fri Nov 10 04:16:16 UTC 2023
port directory: /usr/ports/science/votca
package name: votca-2022.1_1
building for: FreeBSD 132arm64-default-job-10 13.2-RELEASE-p4 FreeBSD 
13.2-RELEASE-p4 arm64
maintained by: y...@freebsd.org
Makefile datestamp: -rw-r--r--  1 root  wheel  2064 Nov  7 01:02 
/usr/ports/science/votca/Makefile
Ports top last git commit: d5268d5f71
Ports top unclean checkout: no
Port dir last git commit: 744d2334a2
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.3.0-1251-ge8a0e12e
Host OSVERSION: 1500000
Jail OSVERSION: 1302001
Job Id: 10

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1302001
UNAME_v=FreeBSD 13.2-RELEASE-p4
UNAME_r=13.2-RELEASE-p4
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.3.0-1251-ge8a0e12e
MASTERMNT=/usr/local/poudriere/data/.m/132arm64-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/132arm64-default/10/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=132arm64-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/132arm64-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.3.0-1251-ge8a0e12e
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for votca-2022.1_1:
     APPS=on: Build applications
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
y...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  
PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.9" 
XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/science/votca/work/.cache  
HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/votca/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 
XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/science/votca/work/.cache  
HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/votca/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
DESTDIR=/wrkdirs/usr/ports/science/votca/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong 
-fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" 
-fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
"  MANPREFIX="/usr/local" BSD_INSTALL
_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
 APPS="" NO_APPS="@comment " CMAKE_BUILD_TYPE="release" 
PYTHON_INCLUDEDIR=include/python3.9  PYTHON_LIBDIR=lib/python3.9  
PYTHON_PLATFORM=freebsd13  PYTHON_SITELIBDIR=lib/python3.9/site-packages  
PYTHON_SUFFIX=39  PYTHON_EXT_SUFFIX=.cpython-39  PYTHON_VER=3.9  
PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D 
LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.1  
PERL_VER=5.36  PERL5_MAN1=lib/perl5/site_perl/man/man1  
PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/votca"  
EXAMPLESDIR="share/examples/votca"  DATADIR="share/votca"  WWWDIR="www/votca"  
ETCDIR="etc/votca"
--End PLIST_SUB--

--SUB_LIST--
 APPS="" NO_APPS="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.9  
PYTHON_LIBDIR=/usr/local/lib/python3.9  PYTHON_PLATFORM=freebsd13  
PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages  PYTHON_SUFFIX=39  
PYTHON_EXT_SUFFIX=.cpython-39  PYTHON_VER=3.9  PYTHON_VERSION=python3.9 
PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local  
DATADIR=/usr/local/share/votca DOCSDIR=/usr/local/share/doc/votca 
EXAMPLESDIR=/usr/local/share/examples/votca  WWWDIR=/usr/local/www/votca 
ETCDIR=/usr/local/etc/votca
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  1048576
stack size              (kbytes, -s)  1048576
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  8192
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   votca-2022.1_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.20.8.pkg
[132arm64-default-job-10] Installing pkg-1.20.8...
[132arm64-default-job-10] Extracting pkg-1.20.8: .......... done
===>   votca-2022.1_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of votca-2022.1_1
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by votca-2022.1_1 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by votca-2022.1_1 for building
=> SHA256 Checksum OK for votca-votca-v2022.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by votca-2022.1_1 for building
===>  Extracting for votca-2022.1_1
=> SHA256 Checksum OK for votca-votca-v2022.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for votca-2022.1_1
===>  Applying FreeBSD patches for votca-2022.1_1 from 
/usr/ports/science/votca/files
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   votca-2022.1_1 depends on executable: bash - not found
===>   Installing existing package /packages/All/bash-5.2.15.pkg
[132arm64-default-job-10] Installing bash-5.2.15...
[132arm64-default-job-10] `-- Installing gettext-runtime-0.22.3...
[132arm64-default-job-10] |   `-- Installing indexinfo-0.3.1...
[132arm64-default-job-10] |   `-- Extracting indexinfo-0.3.1: .... done
[132arm64-default-job-10] `-- Extracting gettext-runtime-0.22.3: .......... done
[132arm64-default-job-10] `-- Installing readline-8.2.1...
[132arm64-default-job-10] `-- Extracting readline-8.2.1: .......... done
[132arm64-default-job-10] Extracting bash-5.2.15: .......... done
===>   votca-2022.1_1 depends on executable: bash - found
===>   Returning to build of votca-2022.1_1
===>   votca-2022.1_1 depends on executable: lmp - not found
===>   Installing existing package /packages/All/lammps-2023.08.02.pkg
[132arm64-default-job-10] Installing lammps-2023.08.02...
[132arm64-default-job-10] `-- Installing curl-8.4.0...
[132arm64-default-job-10] |   `-- Installing libnghttp2-1.58.0...
[132arm64-default-job-10] |   `-- Extracting libnghttp2-1.58.0: .......... done
[132arm64-default-job-10] |   `-- Installing libpsl-0.21.2_3...
[132arm64-default-job-10] |   | `-- Installing libidn2-2.3.4...
[132arm64-default-job-10] |   |   `-- Installing libunistring-1.1...
[132arm64-default-job-10] |   |   `-- Extracting libunistring-1.1: .......... 
done
[132arm64-default-job-10] |   | `-- Extracting libidn2-2.3.4: .......... done
[132arm64-default-job-10] |   `-- Extracting libpsl-0.21.2_3: .......... done
<snip>
[ 16% 58/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o -c 
/wrkdirs/usr/ports/science/votca/w
ork/votca-2022.1/csg/src/libcsg/cgengine.cc
[ 17% 59/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -c 
/wrkdirs/usr/ports/
science/votca/work/votca-2022.1/csg/src/libcsg/cgmoleculedef.cc
[ 17% 60/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o -c /wrkdirs/usr/por
ts/science/votca/work/votca-2022.1/csg/src/libcsg/csgapplication.cc
[ 17% 61/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o -c 
/wrkdirs/usr/ports/
science/votca/work/votca-2022.1/csg/src/libcsg/exclusionlist.cc
[ 18% 62/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca
-2022.1/csg/src/libcsg/imcio.cc
[ 18% 63/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o -c 
/wrkdirs/usr/ports/science/votca/w
ork/votca-2022.1/csg/src/libcsg/molecule.cc
[ 18% 64/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.
1/csg/src/libcsg/map.cc
[ 19% 65/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/vo
tca-2022.1/csg/src/libcsg/nblist.cc
[ 19% 66/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist_3body.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist_3body.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist_3body.cc.o -c 
/wrkdirs/usr/ports/sci
ence/votca/work/votca-2022.1/csg/src/libcsg/nblist_3body.cc
[ 19% 67/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o -c 
/wrkdirs/usr/ports/science/v
otca/work/votca-2022.1/csg/src/libcsg/nblistgrid.cc
[ 19% 68/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o -c /wrkdirs/u
sr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/nblistgrid_3body.cc
[ 20% 69/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o -c 
/wrkdirs/usr/ports/sci
ence/votca/work/votca-2022.1/csg/src/libcsg/nematicorder.cc
[ 20% 70/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o -c 
/wrkdirs/usr/ports/science/votca/work
/votca-2022.1/csg/src/libcsg/openbox.cc
[ 20% 71/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o -c /wrkdirs/usr/
ports/science/votca/work/votca-2022.1/csg/src/libcsg/orthorhombicbox.cc
[ 21% 72/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o
 -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o.d
 -o csg/src/libcsg/CMakeFiles/votca_csg
.dir/potentialfunctions/potentialfunction.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/potentialfunctions/potentialfunction.cc
[ 21% 73/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o
 -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o.d
 -o csg/src/libcsg/CMakeFiles
/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/potentialfunctions/potentialfunctioncbspl.cc
[ 21% 74/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o
 -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o.d
 -o csg/src/libcsg/CMakeFiles
/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/potentialfunctions/potentialfunctionlj126.cc
[ 22% 75/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o
 -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o.d
 -o csg/src/libcsg/CMakeFiles/vot
ca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/potentialfunctions/potentialfunctionljg.cc
[ 22% 76/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/topologymap.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/topologymap.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/topologymap.cc.o -c 
/wrkdirs/usr/ports/scienc
e/votca/work/votca-2022.1/csg/src/libcsg/topologymap.cc
[ 22% 77/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/topology.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/topology.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/topology.cc.o -c 
/wrkdirs/usr/ports/science/votca/w
ork/votca-2022.1/csg/src/libcsg/topology.cc
[ 22% 78/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o -c /wrkdirs/usr/por
ts/science/votca/work/votca-2022.1/csg/src/libcsg/topologyreader.cc
[ 23% 79/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o -c 
/wrkdirs/usr/ports/sci
ence/votca/work/votca-2022.1/csg/src/libcsg/triclinicbox.cc
[ 23% 80/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o -c /wrkdirs/u
sr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/trajectoryreader.cc
[ 23% 81/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o -c 
/wrkdirs/usr/ports/science/votca/work
/votca-2022.1/csg/src/libcsg/version.cc
[ 24% 82/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectorywriter.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectorywriter.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectorywriter.cc.o -c /wrkdirs/u
sr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/trajectorywriter.cc
[ 24% 83/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o 
-MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o.d
 -o csg/src/libcsg/CMakeFiles/votca_csg.dir/m
odules/io/dlpolytrajectorywriter.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:46:26:
 warning: 'extension' is deprecated: Use path::extension() instead 
[-Wdeprecated-declarations]
  if (boost::filesystem::extension(filepath).size() == 0) {
                         ^
/usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has 
been explicitly marked deprecated here
BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead")
^
/usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 
'BOOST_FILESYSTEM_DETAIL_DEPRECATED'
#define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg)
                                                ^
/usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from 
macro 'BOOST_DEPRECATED'
#define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg)))
                                             ^
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:51:33:
 warning: 'extension' is deprecated: Use path::extension() instead 
[-Wdeprecated-declarations]
  } else if (boost::filesystem::extension(filepath) == ".dlpc") {
                                ^
/usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has 
been explicitly marked deprecated here
BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead")
^
/usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 
'BOOST_FILESYSTEM_DETAIL_DEPRECATED'
#define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg)
                                                ^
/usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from 
macro 'BOOST_DEPRECATED'
#define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg)))
                                             ^
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:56:33:
 warning: 'extension' is deprecated: Use path::extension() instead 
[-Wdeprecated-declarations]
  } else if (boost::filesystem::extension(filepath) == ".dlph") {
                                ^
/usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has 
been explicitly marked deprecated here
BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead")
^
/usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 
'BOOST_FILESYSTEM_DETAIL_DEPRECATED'
#define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg)
                                                ^
/usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from 
macro 'BOOST_DEPRECATED'
#define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg)))
                                             ^
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:65:26:
 warning: 'basename' is deprecated: Use path::stem() instead 
[-Wdeprecated-declarations]
  if (boost::filesystem::basename(filepath).size() == 0) {
                         ^
/usr/local/include/boost/filesystem/convenience.hpp:34:1: note: 'basename' has 
been explicitly marked deprecated here
BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::stem() instead")
^
/usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 
'BOOST_FILESYSTEM_DETAIL_DEPRECATED'
#define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg)
                                                ^
/usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from 
macro 'BOOST_DEPRECATED'
#define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg)))
                                             ^
4 warnings generated.
[ 24% 84/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o 
-MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o.d
 -o csg/src/libcsg/CMakeFiles/votca_csg.dir/m
odules/io/dlpolytrajectoryreader.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:50:26:
 warning: 'extension' is deprecated: Use path::extension() instead 
[-Wdeprecated-declarations]
  if (boost::filesystem::extension(filepath).size() == 0) {
                         ^
/usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has 
been explicitly marked deprecated here
BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead")
^
/usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 
'BOOST_FILESYSTEM_DETAIL_DEPRECATED'
#define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg)
                                                ^
/usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from 
macro 'BOOST_DEPRECATED'
#define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg)))
                                             ^
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:56:33:
 warning: 'extension' is deprecated: Use path::extension() instead 
[-Wdeprecated-declarations]
  } else if (boost::filesystem::extension(filepath) == ".dlpc") {
                                ^
/usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has 
been explicitly marked deprecated here
BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead")
^
/usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 
'BOOST_FILESYSTEM_DETAIL_DEPRECATED'
#define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg)
                                                ^
/usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from 
macro 'BOOST_DEPRECATED'
#define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg)))
                                             ^
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:61:33:
 warning: 'extension' is deprecated: Use path::extension() instead 
[-Wdeprecated-declarations]
  } else if (boost::filesystem::extension(filepath) == ".dlph") {
                                ^
/usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has 
been explicitly marked deprecated here
BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead")
^
/usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 
'BOOST_FILESYSTEM_DETAIL_DEPRECATED'
#define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg)
                                                ^
/usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from 
macro 'BOOST_DEPRECATED'
#define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg)))
                                             ^
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:70:26:
 warning: 'basename' is deprecated: Use path::stem() instead 
[-Wdeprecated-declarations]
  if (boost::filesystem::basename(filepath).size() == 0) {
                         ^
/usr/local/include/boost/filesystem/convenience.hpp:34:1: note: 'basename' has 
been explicitly marked deprecated here
BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::stem() instead")
^
/usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 
'BOOST_FILESYSTEM_DETAIL_DEPRECATED'
#define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg)
                                                ^
/usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from 
macro 'BOOST_DEPRECATED'
#define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg)))
                                             ^
4 warnings generated.
[ 25% 85/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o 
-MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o.d 
-o csg/src/libcsg/CMakeFiles/votca_csg.dir/modul
es/io/dlpolytopologyreader.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc:159:26:
 warning: 'basename' is deprecated: Use path::stem() instead 
[-Wdeprecated-declarations]
  if (boost::filesystem::basename(filepath).size() == 0) {
                         ^
/usr/local/include/boost/filesystem/convenience.hpp:34:1: note: 'basename' has 
been explicitly marked deprecated here
BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::stem() instead")
^
/usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 
'BOOST_FILESYSTEM_DETAIL_DEPRECATED'
#define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg)
                                                ^
/usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from 
macro 'BOOST_DEPRECATED'
#define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg)))
                                             ^
1 warning generated.
[ 25% 86/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o -
c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/growriter.cc
[ 25% 87/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -
c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/groreader.cc
[ 25% 88/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/la
mmpsdatareader.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/lammpsdatareader.cc
[ 26% 89/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/la
mmpsdumpwriter.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/lammpsdumpwriter.cc
[ 26% 90/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/la
mmpsdumpreader.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/lammpsdumpreader.cc
[ 26% 91/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o -
c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/pdbwriter.cc
[ 27% 92/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -
c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/pdbreader.cc
[ 27% 93/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/
xmltopologyreader.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/xmltopologyreader.cc
[ 27% 94/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o -
c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/xyzreader.cc
[ 28% 95/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o -
c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/xyzwriter.cc
[ 28% 96/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o.d -o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/
gmxtopologyreader.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/gmxtopologyreader.cc
[ 28% 97/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o.d 
-o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules
/io/gmxtrajectoryreader.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/gmxtrajectoryreader.cc
[ 29% 98/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o -MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o.d 
-o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules
/io/gmxtrajectorywriter.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/gmxtrajectorywriter.cc
[ 29% 99/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o -MF 
csg/src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_map.cc
[ 29% 100/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY 
-Dvotca_csg_EXPORTS 
-I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o 
-MF 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o.d 
-o csg/src/libcsg/CMakeFiles/votca_csg.dir/modu
les/io/h5mdtrajectoryreader.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/h5mdtrajectoryreader.cc
[ 29% 101/331] : && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic 
-Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  -DNDEBUG  
-fstack-protector-strong -shared -Wl,-soname,libvotca_csg.so.2022 -o 
csg/src/libcsg/libvotca_csg.so.2022 
csg/src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/beadstructure.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapp
lication.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist_3body.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o
 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o
 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o
 
csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o
 csg/src/libcsg/CMakeF
iles/votca_csg.dir/topology.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/topologymap.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectorywriter.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o 
csg/src/libcsg/CMa
keFiles/votca_csg.dir/modules/io/pdbreader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o 
csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o  
-Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:
  /usr/local/lib/libgromacs_d.so.8.0.0  -L/usr/local/lib -lhdf5 -lhdf5_cpp  
tools/src/libtools/libvotca_tools.so.2022  
/usr/local/lib/libboost_program_options.so  
/usr/local/lib/libboost_filesystem.so  /usr/local/lib/libboost_system.so  
/usr/local/lib/libboost_regex.so  -lm 
 /usr/local/lib/libboost_program_options.so  /usr/lib/libomp.so  
/usr/local/lib/libfftw3.so  -lpthread  -Wl,-rpath-link,/usr/local/lib && :
[ 30% 102/331] /usr/local/bin/cmake -E cmake_symlink_library 
csg/src/libcsg/libvotca_csg.so.2022 csg/src/libcsg/libvotca_csg.so.2022 
csg/src/libcsg/libvotca_csg.so && :
[ 30% 103/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic 
-Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  -DNDEBUG 
-fstack-protector-strong csg/src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o -o 
csg/src/tools/csg_map  
-Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib:
  csg/src/libcsg/libvotca_csg.so.2022  
tools/src/libtools/libvotca_tools.so.2022  
/usr/local/lib/libboost_program_options.so  /usr/local/lib/libfftw3.so  
/usr/lib/libomp.so  -Wl,-rpath-link,/usr/local/lib && :
[ 30% 104/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -MF 
csg/src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_reupdate.cc
[ 31% 105/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic 
-Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  -DNDEBUG 
-fstack-protector-strong 
csg/src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -o 
csg/src/tools/csg_reupdate  
-Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib:
  csg/src/libcsg/libvotca_csg.so.2022  
tools/src/libtools/libvotca_tools.so.2022  
/usr/local/lib/libboost_program_options.so  /usr/local/lib/libfftw3.so  
/usr/lib/libomp.so  -Wl,-rpath-link,/usr/local/lib && :
[ 31% 106/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_dump.dir/csg_dump.cc.o -MF 
csg/src/tools/CMakeFiles/csg_dump.dir/csg_dump.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_dump.dir/csg_dump.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_dump.cc
[ 31% 107/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic 
-Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  -DNDEBUG 
-fstack-protector-strong csg/src/tools/CMakeFiles/csg_dump.dir/csg_dump.cc.o -o 
csg/src/tools/csg_dump  
-Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib:
  csg/src/libcsg/libvotca_csg.so.2022  
tools/src/libtools/libvotca_tools.so.2022  
/usr/local/lib/libboost_program_options.so  /usr/local/lib/libfftw3.so  
/usr/lib/libomp.so  -Wl,-rpath-link,/usr/local/lib && :
[ 32% 108/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o -MF 
csg/src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_property.cc
[ 32% 109/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic 
-Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  -DNDEBUG 
-fstack-protector-strong 
csg/src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o -o 
csg/src/tools/csg_property  
-Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib:
  csg/src/libcsg/libvotca_csg.so.2022  
tools/src/libtools/libvotca_tools.so.2022  
/usr/local/lib/libboost_program_options.so  /usr/local/lib/libfftw3.so  
/usr/lib/libomp.so  -Wl,-rpath-link,/usr/local/lib && :
[ 32% 110/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_resample.dir/csg_resample.cc.o -MF 
csg/src/tools/CMakeFiles/csg_resample.dir/csg_resample.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_resample.dir/csg_resample.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_resample.cc
[ 32% 111/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic 
-Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  -DNDEBUG 
-fstack-protector-strong 
csg/src/tools/CMakeFiles/csg_resample.dir/csg_resample.cc.o -o 
csg/src/tools/csg_resample  
-Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib:
  csg/src/libcsg/libvotca_csg.so.2022  
tools/src/libtools/libvotca_tools.so.2022  
/usr/local/lib/libboost_program_options.so  /usr/local/lib/libfftw3.so  
/usr/lib/libomp.so  -Wl,-rpath-link,/usr/local/lib && :
[ 33% 112/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat.cc.o -MF 
csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_stat.cc
[ 33% 113/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -MF 
csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_stat_imc.cc
[ 33% 114/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic 
-Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  -DNDEBUG 
-fstack-protector-strong csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat.cc.o 
csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -o 
csg/src/tools/csg_stat  
-Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib:
  csg/src/libcsg/libvotca_csg.so.2022  
tools/src/libtools/libvotca_tools.so.2022  
/usr/local/lib/libboost_program_options.so  /usr/local/lib/libfftw3.so  
/usr/lib/libomp.so  -Wl,-rpath-link,/usr/local/lib && :
[ 34% 115/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -MF 
csg/src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_gmxtopol.cc
[ 34% 116/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic 
-Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  -DNDEBUG 
-fstack-protector-strong 
csg/src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -o 
csg/src/tools/csg_gmxtopol  
-Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib:
  csg/src/libcsg/libvotca_csg.so.2022  
tools/src/libtools/libvotca_tools.so.2022  
/usr/local/lib/libboost_program_options.so  /usr/local/lib/libfftw3.so  
/usr/lib/libomp.so  -Wl,-rpath-link,/usr/local/lib && :
[ 34% 117/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -MF 
csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_dlptopol.cc
[ 35% 118/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic 
-Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  -DNDEBUG 
-fstack-protector-strong 
csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -o 
csg/src/tools/csg_dlptopol  
-Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib:
  csg/src/libcsg/libvotca_csg.so.2022  
tools/src/libtools/libvotca_tools.so.2022  
/usr/local/lib/libboost_program_options.so  /usr/local/lib/libfftw3.so  
/usr/lib/libomp.so  -Wl,-rpath-link,/usr/local/lib && :
[ 35% 119/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -MF 
csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_fmatch.cc
[ 35% 120/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic 
-Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  -DNDEBUG 
-fstack-protector-strong 
csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -o 
csg/src/tools/csg_fmatch  
-Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib:
  csg/src/libcsg/libvotca_csg.so.2022  
tools/src/libtools/libvotca_tools.so.2022  
/usr/local/lib/libboost_program_options.so  /usr/local/lib/libfftw3.so  
/usr/lib/libomp.so  -Wl,-rpath-link,/usr/local/lib && :
[ 35% 121/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools && 
/wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc 
--name /wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools/csg_reupdate 
--format groff --out csg_reupdate.man
FAILED: csg/src/tools/csg_reupdate.man 
/wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools/csg_reupdate.man 
cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools && 
/wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc 
--name /wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools/csg_reupdate 
--format groff --out csg_reupdate.man
ld-elf.so.1: /lib/libgcc_s.so.1: version GCC_4.5.0 required by 
/usr/local/lib/gcc12/libstdc++.so.6 not found
Traceback (most recent call last):
  File 
"/wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc", 
line 282, in <module>
    main()
  File 
"/wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc", 
line 278, in main
    convert_help_message(args)
  File 
"/wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc", 
line 263, in convert_help_message
    msg = subprocess.check_output(
  File "/usr/local/lib/python3.9/subprocess.py", line 424, in check_output
    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
  File "/usr/local/lib/python3.9/subprocess.py", line 528, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command 
'/wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools/csg_reupdate 
--help' returned non-zero exit status 1.
[ 36% 121/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_density.dir/csg_density.cc.o -MF 
csg/src/tools/CMakeFiles/csg_density.dir/csg_density.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_density.dir/csg_density.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_density.cc
[ 36% 121/331] /usr/bin/c++  
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include 
-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include 
-I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools 
-isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED 
-Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  -DBOOST_TIMER_ENABLE_DEPRECATED  
-DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT 
csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -MF 
csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o.d -o 
csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -c 
/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_imc_solve.cc
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/science/votca


Reply via email to