You are receiving this mail as a port that you maintain
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Please investigate the failure and submit a PR to fix
build.

Maintainer:     y...@freebsd.org
Last committer: ger...@freebsd.org
Ident:          $FreeBSD: branches/2019Q2/biology/mummer/Makefile 487272 
2018-12-12 01:35:33Z gerald $
Log URL:        
http://beefy15.nyi.freebsd.org/data/120armv6-quarterly/501102/logs/mummer-4.0.0.b2.2_1.log
Build URL:      
http://beefy15.nyi.freebsd.org/build.html?mastername=120armv6-quarterly&build=501102
Log:

=>> Building biology/mummer
build started at Wed May 15 16:26:00 UTC 2019
port directory: /usr/ports/biology/mummer
package name: mummer-4.0.0.b2.2_1
building for: FreeBSD 120armv6-quarterly-job-10 12.0-RELEASE-p3 FreeBSD 
12.0-RELEASE-p3 1200086 arm
maintained by: y...@freebsd.org
Makefile ident:      $FreeBSD: branches/2019Q2/biology/mummer/Makefile 487272 
2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8-4-g701d8fe1
Host OSVERSION: 1300018
Jail OSVERSION: 1200086
Job Id: 10

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---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
y...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--disable-static --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl 
ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mummer/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mummer/work  
HOME=/wrkdirs/usr/ports/biology/mummer/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/mummer/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mummer/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mummer/work  
HOME=/wrkdirs/usr/ports/biology/mummer/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/mummer/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
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PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/mummer"  
EXAMPLESDIR="share/examples/mummer"  DATADIR="share/mummer"  
WWWDIR="www/mummer"  ETCDIR="etc/mummer"
--End PLIST_SUB--

--SUB_LIST--
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DOCSDIR=/usr/local/share/doc/mummer 
EXAMPLESDIR=/usr/local/share/examples/mummer  WWWDIR=/usr/local/www/mummer 
ETCDIR=/usr/local/etc/mummer
--End SUB_LIST--

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MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
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--Resource limits--
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data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
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max user processes              (-u)  89999
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swap limit              (kbytes, -w)  unlimited
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--End resource limits--
=======================<phase: check-sanity   >============================
===>  License ART10 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   mummer-4.0.0.b2.2_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[120armv6-quarterly-job-10] Installing pkg-1.10.5_5...
[120armv6-quarterly-job-10] Extracting pkg-1.10.5_5: .......... done
===>   mummer-4.0.0.b2.2_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of mummer-4.0.0.b2.2_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License ART10 accepted by the user
===> Fetching all distfiles required by mummer-4.0.0.b2.2_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License ART10 accepted by the user
===> Fetching all distfiles required by mummer-4.0.0.b2.2_1 for building
=> SHA256 Checksum OK for mummer4-mummer-v4.0.0beta2-2-g277dac5_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
<snip>
===>   Returning to build of mummer-4.0.0.b2.2_1
===>   mummer-4.0.0.b2.2_1 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_3.txz
[120armv6-quarterly-job-10] Installing gmake-4.2.1_3...
[120armv6-quarterly-job-10] `-- Installing gettext-runtime-0.19.8.1_2...
[120armv6-quarterly-job-10] `-- Extracting gettext-runtime-0.19.8.1_2: 
.......... done
[120armv6-quarterly-job-10] Extracting gmake-4.2.1_3: .......... done
===>   mummer-4.0.0.b2.2_1 depends on executable: gmake - found
===>   Returning to build of mummer-4.0.0.b2.2_1
===>   mummer-4.0.0.b2.2_1 depends on package: perl5>=5.28.r1<5.29 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for mummer-4.0.0.b2.2_1
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:8: installing './compile'
configure.ac:2: installing './config.guess'
configure.ac:2: installing './config.sub'
configure.ac:4: installing './install-sh'
configure.ac:4: installing './missing'
Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
configure: loading site script /usr/ports/Templates/config.site
checking build system type... armv6-portbld-freebsd12.0
checking host system type... armv6-portbld-freebsd12.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking whether gmake supports nested variables... yes
checking whether gmake supports nested variables... (cached) yes
checking how to print strings... printf
checking whether gmake supports the include directive... yes (GNU style)
checking for gcc... /nxb-bin/usr/bin/cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /nxb-bin/usr/bin/cc accepts -g... yes
checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed
checking whether /nxb-bin/usr/bin/cc understands -c and -o together... yes
checking dependency style of /nxb-bin/usr/bin/cc... gcc3
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... (cached) /usr/bin/fgrep
checking for ld used by /nxb-bin/usr/bin/cc... /nxb-bin/usr/bin/ld
checking if the linker (/nxb-bin/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
checking the name lister (/usr/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking how to convert armv6-portbld-freebsd12.0 file names to 
armv6-portbld-freebsd12.0 format... func_convert_file_noop
checking how to convert armv6-portbld-freebsd12.0 file names to toolchain 
format... func_convert_file_noop
checking for /nxb-bin/usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm output from /nxb-bin/usr/bin/cc object... 
ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking for objdir... .libs
checking if /nxb-bin/usr/bin/cc supports -fno-rtti -fno-exceptions... yes
checking for /nxb-bin/usr/bin/cc option to produce PIC... -fPIC -DPIC
checking if /nxb-bin/usr/bin/cc PIC flag -fPIC -DPIC works... yes
checking if /nxb-bin/usr/bin/cc static flag -static works... yes
checking if /nxb-bin/usr/bin/cc supports -c -o file.o... yes
checking if /nxb-bin/usr/bin/cc supports -c -o file.o... (cached) yes
checking whether the /nxb-bin/usr/bin/cc linker (/nxb-bin/usr/bin/ld) supports 
shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... freebsd12.0 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking whether we are using the GNU C++ compiler... yes
checking whether /nxb-bin/usr/bin/c++ accepts -g... yes
checking dependency style of /nxb-bin/usr/bin/c++... gcc3
checking how to run the C++ preprocessor... /nxb-bin/usr/bin/c++ -E
checking for ld used by /nxb-bin/usr/bin/c++... /nxb-bin/usr/bin/ld
checking if the linker (/nxb-bin/usr/bin/ld) is GNU ld... yes
checking whether the /nxb-bin/usr/bin/c++ linker (/nxb-bin/usr/bin/ld) supports 
shared libraries... yes
checking for /nxb-bin/usr/bin/c++ option to produce PIC... -fPIC -DPIC
checking if /nxb-bin/usr/bin/c++ PIC flag -fPIC -DPIC works... yes
checking if /nxb-bin/usr/bin/c++ static flag -static works... yes
checking if /nxb-bin/usr/bin/c++ supports -c -o file.o... yes
checking if /nxb-bin/usr/bin/c++ supports -c -o file.o... (cached) yes
checking whether the /nxb-bin/usr/bin/c++ linker (/nxb-bin/usr/bin/ld) supports 
shared libraries... yes
checking dynamic linker characteristics... freebsd12.0 ld.so
checking how to hardcode library paths into programs... immediate
checking for gcc... (cached) /nxb-bin/usr/bin/cc
checking whether we are using the GNU C compiler... (cached) yes
checking whether /nxb-bin/usr/bin/cc accepts -g... (cached) yes
checking for /nxb-bin/usr/bin/cc option to accept ISO C89... (cached) none 
needed
checking whether /nxb-bin/usr/bin/cc understands -c and -o together... (cached) 
yes
checking dependency style of /nxb-bin/usr/bin/cc... (cached) gcc3
checking for env... /usr/bin/env
checking for OpenMP flag of C++ compiler... unknown
checking for yaggo... /usr/local/bin/yaggo
checking for gnuplot... no
checking for gnuplot5... no
checking for gnuplot4... no
checking for __int128... no
checking if std::thread::sleep_for is supported... yes
checking for perl... (cached) /usr/local/bin/perl
checking for Perl prefix... /usr/local
checking for Perl extension include path... /usr/local/lib/perl5/5.28/mach/CORE
checking for Perl extension target directory... 
/usr/local/lib/perl5/site_perl/mach/5.28
checking for Perl extensions C preprocessor flags... -DHAS_FPSETMASK 
-DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong 
-I/usr/local/include
checking for Perl extensions linker flags... -shared  
-L/usr/local/lib/perl5/5.28/mach/CORE -lperl -L/usr/local/lib 
-fstack-protector-strong
configure: compiling with flags: CXXFLAGS=-std=c++0x -O2 -pipe 
-fno-strict-aliasing  
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating mummer.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
===========================================================================
=======================<phase: build          >============================
===>  Building for mummer-4.0.0.b2.2_1
gmake[1]: Entering directory 
'/wrkdirs/usr/ports/biology/mummer/work/mummer-4.0.0beta2-2-g277dac5'
/usr/local/bin/yaggo -o src/umd/nucmer_cmdline.hpp src/umd/nucmer_cmdline.yaggo
/usr/local/bin/yaggo -o tests/generate_sequences_cmdline.hpp 
tests/generate_sequences_cmdline.yaggo
/usr/local/bin/yaggo -o tests/ufasta_src/dsort_cmdline.hpp 
tests/ufasta_src/dsort_cmdline.yaggo
/usr/local/bin/yaggo -o tests/ufasta_src/sort_cmdline.hpp 
tests/ufasta_src/sort_cmdline.yaggo
/usr/local/bin/yaggo -o tests/check_cigar_cmdline.hpp 
tests/check_cigar_cmdline.yaggo
/usr/local/bin/yaggo -o tests/check_LCP_cmdline.hpp 
tests/check_LCP_cmdline.yaggo
gmake  all-am
gmake[2]: Entering directory 
'/wrkdirs/usr/ports/biology/mummer/work/mummer-4.0.0beta2-2-g277dac5'
depbase=`echo src/essaMEM/fasta.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  
-std=c++0x -O2 -pipe -fno-strict-aliasing   -MT src/essaMEM/fasta.o -MD -MP -MF 
$depbase.Tpo -c -o src/essaMEM/fasta.o src/essaMEM/fasta.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo src/essaMEM/mummer.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  
-std=c++0x -O2 -pipe -fno-strict-aliasing   -MT src/essaMEM/mummer.o -MD -MP 
-MF $depbase.Tpo -c -o src/essaMEM/mummer.o src/essaMEM/mummer.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo src/essaMEM/sparseSA.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ./libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  -std=c++0x -O2 -pipe 
-fno-strict-aliasing   -MT src/essaMEM/sparseSA.lo -MD -MP -MF $depbase.Tpo -c 
-o src/essaMEM/sparseSA.lo src/essaMEM/sparseSA.cpp &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -Wall -I./include 
-std=c++11 -std=c++0x -O2 -pipe -fno-strict-aliasing -MT 
src/essaMEM/sparseSA.lo -MD -MP -MF src/essaMEM/.deps/sparseSA.Tpo -c 
src/essaMEM/sparseSA.cpp  -fPIC -DPIC -o src/essaMEM/.libs/sparseSA.o
depbase=`echo src/essaMEM/sssort_compact.lo | sed 
's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ./libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  -std=c++0x -O2 -pipe 
-fno-strict-aliasing   -MT src/essaMEM/sssort_compact.lo -MD -MP -MF 
$depbase.Tpo -c -o src/essaMEM/sssort_compact.lo src/essaMEM/sssort_compact.cc 
&&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -Wall -I./include 
-std=c++11 -std=c++0x -O2 -pipe -fno-strict-aliasing -MT 
src/essaMEM/sssort_compact.lo -MD -MP -MF src/essaMEM/.deps/sssort_compact.Tpo 
-c src/essaMEM/sssort_compact.cc  -fPIC -DPIC -o 
src/essaMEM/.libs/sssort_compact.o
depbase=`echo src/tigr/mgaps.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ./libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  -std=c++0x -O2 -pipe 
-fno-strict-aliasing   -MT src/tigr/mgaps.lo -MD -MP -MF $depbase.Tpo -c -o 
src/tigr/mgaps.lo src/tigr/mgaps.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -Wall -I./include 
-std=c++11 -std=c++0x -O2 -pipe -fno-strict-aliasing -MT src/tigr/mgaps.lo -MD 
-MP -MF src/tigr/.deps/mgaps.Tpo -c src/tigr/mgaps.cc  -fPIC -DPIC -o 
src/tigr/.libs/mgaps.o
depbase=`echo src/tigr/postnuc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ./libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  -std=c++0x -O2 -pipe 
-fno-strict-aliasing   -MT src/tigr/postnuc.lo -MD -MP -MF $depbase.Tpo -c -o 
src/tigr/postnuc.lo src/tigr/postnuc.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -Wall -I./include 
-std=c++11 -std=c++0x -O2 -pipe -fno-strict-aliasing -MT src/tigr/postnuc.lo 
-MD -MP -MF src/tigr/.deps/postnuc.Tpo -c src/tigr/postnuc.cc  -fPIC -DPIC -o 
src/tigr/.libs/postnuc.o
src/tigr/postnuc.cc:174:37: error: non-constant-expression cannot be narrowed 
from type 'signed char' to 'char' in initializer list [-Wc++11-narrowing]
        Alignments.push_back({ *Mp, CurrCp->dirB } );
                                    ^~~~~~~~~~~~
src/tigr/postnuc.cc:174:37: note: insert an explicit cast to silence this issue
        Alignments.push_back({ *Mp, CurrCp->dirB } );
                                    ^~~~~~~~~~~~
                                    static_cast<char>( )
1 error generated.
gmake[2]: *** [Makefile:1903: src/tigr/postnuc.lo] Error 1
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/mummer/work/mummer-4.0.0beta2-2-g277dac5'
gmake[1]: *** [Makefile:1110: all] Error 2
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/mummer/work/mummer-4.0.0beta2-2-g277dac5'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/mummer
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