You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     j...@freebsd.org
Last committer: j...@freebsd.org
Ident:          $FreeBSD: branches/2019Q3/biology/bolt-lmm/Makefile 502673 
2019-05-26 03:36:49Z jwb $
Log URL:        
http://thunderx1.nyi.freebsd.org/data/120arm64-quarterly/508200/logs/bolt-lmm-2.3.2.log
Build URL:      
http://thunderx1.nyi.freebsd.org/build.html?mastername=120arm64-quarterly&build=508200
Log:

=>> Building biology/bolt-lmm
build started at Mon Aug 12 07:17:13 UTC 2019
port directory: /usr/ports/biology/bolt-lmm
package name: bolt-lmm-2.3.2
building for: FreeBSD 120arm64-quarterly-job-24 12.0-RELEASE-p8 FreeBSD 
12.0-RELEASE-p8 1200086 arm64
maintained by: j...@freebsd.org
Makefile ident:      $FreeBSD: branches/2019Q3/biology/bolt-lmm/Makefile 502673 
2019-05-26 03:36:49Z jwb $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300002
Jail OSVERSION: 1200086
Job Id: 24

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---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for bolt-lmm-2.3.2:
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bolt-lmm/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bolt-lmm/work  
HOME=/wrkdirs/usr/ports/biology/bolt-lmm/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/bolt-lmm/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bolt-lmm/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bolt-lmm/work  
HOME=/wrkdirs/usr/ports/biology/bolt-lmm/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/bolt-lmm/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  
LOCALBASE=/usr/local  CC="gcc8" CFLAGS="-O2 -pipe  -fstack-protector-strong 
-Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing "  CPP="cpp8" CPPFLAGS=""  
LDFLAGS=" -L/wrkdirs/usr/ports/biology/bolt-lmm/work -fstack-protector-
 strong -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 " LIBS=""  
CXX="g++8" CXXFLAGS="-O2 -pipe  -fstack-protector-strong 
-Wl,-rpath=/usr/local/lib/gcc8  -nostdinc++ -isystem /usr/include/c++/v1 
-Wl,-rpath=/usr/local/lib/gcc8 "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTEXAMPLES="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/bolt-lmm"  
EXAMPLESDIR="share/examples/bolt-lmm"  DATADIR="share/bolt-lmm"  
WWWDIR="www/bolt-lmm"  ETCDIR="etc/bolt-lmm"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/bolt-lmm 
DOCSDIR=/usr/local/share/doc/bolt-lmm 
EXAMPLESDIR=/usr/local/share/examples/bolt-lmm  WWWDIR=/usr/local/www/bolt-lmm 
ETCDIR=/usr/local/etc/bolt-lmm
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
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# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

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LINT=   true
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#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) 
(based on LLVM 6.0.1) Target: aarch64-unknown-freebsd12.0 Thread model: posix 
InstalledDir: /usr/bin
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posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" 
"/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" 
"/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" 
"-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" 
"-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
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posix InstalledDir: /usr/bin
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ARCH=aarch64
OPSYS=FreeBSD
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OSREL=12.0
OSVERSION=1200086
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  1048576
stack size              (kbytes, -s)  1048576
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
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virtual mem size        (kbytes, -v)  unlimited
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socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   bolt-lmm-2.3.2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.11.1.txz
[120arm64-quarterly-job-24] Installing pkg-1.11.1...
[120arm64-quarterly-job-24] Extracting pkg-1.11.1: .......... done
===>   bolt-lmm-2.3.2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of bolt-lmm-2.3.2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by bolt-lmm-2.3.2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by bolt-lmm-2.3.2 for building
=> SHA256 Checksum OK for BOLT-LMM_v2.3.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by bolt-lmm-2.3.2 for building
===>  Extracting for bolt-lmm-2.3.2
=> SHA256 Checksum OK for BOLT-LMM_v2.3.2.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for bolt-lmm-2.3.2
===>  Applying FreeBSD patches for bolt-lmm-2.3.2
===========================================================================
=======================<phase: build-depends  >============================
===>   bolt-lmm-2.3.2 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_3.txz
[120arm64-quarterly-job-24] Installing gmake-4.2.1_3...
[120arm64-quarterly-job-24] `-- Installing gettext-runtime-0.20.1...
[120arm64-quarterly-job-24] |   `-- Installing indexinfo-0.3.1...
[120arm64-quarterly-job-24] |   `-- Extracting indexinfo-0.3.1: .... done
[120arm64-quarterly-job-24] `-- Extracting gettext-runtime-0.20.1: .......... 
done
[120arm64-quarterly-job-24] Extracting gmake-4.2.1_3: .......... done
===>   bolt-lmm-2.3.2 depends on executable: gmake - found
===>   Returning to build of bolt-lmm-2.3.2
===>   bolt-lmm-2.3.2 depends on executable: gcc8 - not found
===>   Installing existing package /packages/All/gcc8-8.3.0_2.txz
[120arm64-quarterly-job-24] Installing gcc8-8.3.0_2...
[120arm64-quarterly-job-24] `-- Installing binutils-2.32_1,1...
[120arm64-quarterly-job-24] `-- Extracting binutils-2.32_1,1: .......... done
[120arm64-quarterly-job-24] `-- Installing gmp-6.1.2_1...
[120arm64-quarterly-job-24] `-- Extracting gmp-6.1.2_1: .......... done
[120arm64-quarterly-job-24] `-- Installing mpc-1.1.0_2...
[120arm64-quarterly-job-24] |   `-- Installing mpfr-4.0.2...
[120arm64-quarterly-job-24] |   `-- Extracting mpfr-4.0.2: .......... done
[120arm64-quarterly-job-24] `-- Extracting mpc-1.1.0_2: ......... done
[120arm64-quarterly-job-24] Extracting gcc8-8.3.0_2: .......... done
Message from gcc8-8.3.0_2:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc8

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   bolt-lmm-2.3.2 depends on executable: gcc8 - found
===>   Returning to build of bolt-lmm-2.3.2
===>   bolt-lmm-2.3.2 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   bolt-lmm-2.3.2 depends on shared library: libnlopt.so - not found
===>   Installing existing package /packages/All/nlopt-2.6.1_1.txz
[120arm64-quarterly-job-24] Installing nlopt-2.6.1_1...
[120arm64-quarterly-job-24] `-- Installing guile2-2.2.5...
[120arm64-quarterly-job-24] |   `-- Installing boehm-gc-threaded-8.0.4...
[120arm64-quarterly-job-24] |   | `-- Installing boehm-gc-8.0.4...
[120arm64-quarterly-job-24] |   | `-- Extracting boehm-gc-8.0.4: .......... done
[120arm64-quarterly-job-24] |   `-- Extracting boehm-gc-threaded-8.0.4: 
.......... done
[120arm64-quarterly-job-24] |   `-- Installing libffi-3.2.1_3...
[120arm64-quarterly-job-24] |   `-- Extracting libffi-3.2.1_3: .......... done
[120arm64-quarterly-job-24] |   `-- Installing libltdl-2.4.6...
[120arm64-quarterly-job-24] |   `-- Extracting libltdl-2.4.6: .......... done
[120arm64-quarterly-job-24] |   `-- Installing libunistring-0.9.10_1...
[120arm64-quarterly-job-24] |   `-- Extracting libunistring-0.9.10_1: 
.......... done
[120arm64-quarterly-job-24] |   `-- Installing readline-8.0.0...
[120arm64-quarterly-job-24] |   `-- Extracting readline-8.0.0: .......... done
[120arm64-quarterly-job-24] `-- Extracting guile2-2.2.5: .......... done
[120arm64-quarterly-job-24] `-- Installing py36-numpy-1.16.1_2,1...
[120arm64-quarterly-job-24] |   `-- Installing blas-3.5.0_5...
[120arm64-quarterly-job-24] |   `-- Extracting blas-3.5.0_5: ....... done
[120arm64-quarterly-job-24] |   `-- Installing cblas-1.0_11...
[120arm64-quarterly-job-24] |   `-- Extracting cblas-1.0_11: ......... done
[120arm64-quarterly-job-24] |   `-- Installing lapack-3.5.0_7...
[120arm64-quarterly-job-24] |   `-- Extracting lapack-3.5.0_7: .......... done
[120arm64-quarterly-job-24] |   `-- Installing py36-setuptools-41.0.1...
[120arm64-quarterly-job-24] |   | `-- Installing python36-3.6.9...
[120arm64-quarterly-job-24] |   | `-- Extracting python36-3.6.9: .......... done
[120arm64-quarterly-job-24] |   `-- Extracting py36-setuptools-41.0.1: 
.......... done
[120arm64-quarterly-job-24] |   `-- Installing suitesparse-5.2.0_3...
[120arm64-quarterly-job-24] |   | `-- Installing metis-5.1.0_7...
[120arm64-quarterly-job-24] |   | `-- Extracting metis-5.1.0_7: .......... done
[120arm64-quarterly-job-24] |   | `-- Installing openblas-0.2.20_8,1...
[120arm64-quarterly-job-24] |   | `-- Extracting openblas-0.2.20_8,1: ......... 
done
[120arm64-quarterly-job-24] |   `-- Extracting suitesparse-5.2.0_3: .......... 
done
[120arm64-quarterly-job-24] `-- Extracting py36-numpy-1.16.1_2,1: .......... 
done
[120arm64-quarterly-job-24] Extracting nlopt-2.6.1_1: .......... done
Message from cblas-1.0_11:

===>   NOTICE:

The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python36-3.6.9:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py36-gdbm       databases/py-gdbm@py36
py36-sqlite3    databases/py-sqlite3@py36
py36-tkinter    x11-toolkits/py-tkinter@py36

===========================================================================
Message from metis-5.1.0_7:

===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   bolt-lmm-2.3.2 depends on shared library: libnlopt.so - found 
(/usr/local/lib/libnlopt.so)
===>   Returning to build of bolt-lmm-2.3.2
===>   bolt-lmm-2.3.2 depends on shared library: libopenblas.so - found 
(/usr/local/lib/libopenblas.so)
===>   bolt-lmm-2.3.2 depends on shared library: libboost_program_options.so - 
not found
===>   Installing existing package /packages/All/boost-libs-1.70.0_2.txz
[120arm64-quarterly-job-24] Installing boost-libs-1.70.0_2...
[120arm64-quarterly-job-24] `-- Installing icu-64.2,1...
[120arm64-quarterly-job-24] `-- Extracting icu-64.2,1: .......... done
[120arm64-quarterly-job-24] Extracting boost-libs-1.70.0_2: .......... done
Message from boost-libs-1.70.0_2:

You have built the Boost library with thread support.

Don't forget to add -pthread to your linker options when
linking your code.
===>   bolt-lmm-2.3.2 depends on shared library: libboost_program_options.so - 
found (/usr/local/lib/libboost_program_options.so)
===>   Returning to build of bolt-lmm-2.3.2
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for bolt-lmm-2.3.2
===========================================================================
=======================<phase: build          >============================
===>  Building for bolt-lmm-2.3.2
gmake[1]: Entering directory 
'/wrkdirs/usr/ports/biology/bolt-lmm/work/BOLT-LMM_v2.3.2/src'
g++8 -O2 -pipe  -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8  
-nostdinc++ -isystem /usr/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc8  -O2 
-DMEASURE_DGEMM -DVERBOSE -Wall -fopenmp -I/usr/local/include -o BoltMain.o -c 
BoltMain.cpp
In file included from BoltMain.cpp:38:
MemoryUtils.hpp:34:10: fatal error: xmmintrin.h: No such file or directory
 #include <xmmintrin.h>
          ^~~~~~~~~~~~~
compilation terminated.
gmake[1]: *** [Makefile:116: BoltMain.o] Error 1
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/bolt-lmm/work/BOLT-LMM_v2.3.2/src'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/bolt-lmm
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