You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     j...@freebsd.org
Last committer: ger...@freebsd.org
Ident:          $FreeBSD: branches/2019Q4/biology/ncbi-blast+/Makefile 507372 
2019-07-26 20:46:53Z gerald $
Log URL:        
http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/514178/logs/ncbi-blast+-2.9.0_3.log
Build URL:      
http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=514178
Log:

=>> Building biology/ncbi-blast+
build started at Thu Oct 10 08:16:34 UTC 2019
port directory: /usr/ports/biology/ncbi-blast+
package name: ncbi-blast+-2.9.0_3
building for: FreeBSD 120armv7-quarterly-job-15 12.0-RELEASE-p10 FreeBSD 
12.0-RELEASE-p10 1200086 arm
maintained by: j...@freebsd.org
Makefile ident:      $FreeBSD: branches/2019Q4/biology/ncbi-blast+/Makefile 
507372 2019-07-26 20:46:53Z gerald $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300040
Jail OSVERSION: 1200086
Job Id: 15

---Begin Environment---
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ABI_FILE=/usr/lib/crt1.o
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UNAME_r=12.0-RELEASE-p10
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MAIL=/var/mail/root
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HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
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POUDRIEREPATH=/usr/local/bin/poudriere
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---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
AR="ar cr" --without-boost --libdir=/usr/local/lib/ncbi-tools++ 
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
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ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 
PYTHON="/usr/local/bin/python3.6" 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work  
HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
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RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work 
 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work  
HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  
LOCALBASE=/usr/local  CC="gcc9" CFLAGS="-O2 -pipe  -fstack-protector-strong 
-Wl,-rpath=/usr/local/lib/gcc9 -fno-strict-aliasing "  CPP="cpp9" CPPFLAGS=""  
LDFLAGS=" -fstack-protector-strong -W
 l,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 " LIBS=""  CXX="g++9" 
CXXFLAGS="-O2 -pipe  -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9  
-Wl,-rpath=/usr/local/lib/gcc9 "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
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PYTHON_PLATFORM=freebsd12  PYTHON_SITELIBDIR=lib/python3.6/site-packages  
PYTHON_SUFFIX=36  PYTHON_VER=3.6  PYTHON_VERSION=python3.6 PYTHON2="@comment " 
PYTHON3="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local 
LIB32DIR=lib PERL_VERSION=5.30.0  PERL_VER=5.30  
PERL5_MAN1=lib/perl5/site_perl/man/man1  
PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.30 DOCSDIR="share/doc/ncbi-blast+"  
EXAMPLESDIR="share/examples/ncbi-blast+"  DATADIR="share/ncbi-blast+"  
WWWDIR="www/ncbi-blast+"  ETCDIR="etc/ncbi-blast+"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/ncbi-blast+ 
DOCSDIR=/usr/local/share/doc/ncbi-blast+ 
EXAMPLESDIR=/usr/local/share/examples/ncbi-blast+  
WWWDIR=/usr/local/www/ncbi-blast+ ETCDIR=/usr/local/etc/ncbi-blast+
--End SUB_LIST--

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MACHINE=arm
MACHINE_ARCH=armv7
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) 
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"/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" 
"--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" 
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CC_OUTPUT_9d218390_9bdba57c=yes
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OSREL=12.0
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HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
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data seg size           (kbytes, -d)  33554432
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core file size      (512-blocks, -c)  unlimited
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max user processes              (-u)  89999
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pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ncbi-blast+-2.9.0_3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.12.0.txz
[120armv7-quarterly-job-15] Installing pkg-1.12.0...
[120armv7-quarterly-job-15] Extracting pkg-1.12.0: .......... done
===>   ncbi-blast+-2.9.0_3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ncbi-blast+-2.9.0_3
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.9.0_3 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.9.0_3 for building
=> SHA256 Checksum OK for ncbi-blast-2.9.0+-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.9.0_3 for building
===>  Extracting for ncbi-blast+-2.9.0_3
=> SHA256 Checksum OK for ncbi-blast-2.9.0+-src.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
<snip>
/bin/rm -f libvariation.a .libvariation.a.stamp
ar cr libvariation.a variation__.o variation___.o  
/bin/sh 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh
 /bin/ln -f libvariation.a 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib
/bin/ln -f libvariation.a 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libvariation.a
/bin/ln -f .variation.dep 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.variation.dep
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation'
/usr/local/bin/gmake -C macro -w  all_r  ||  exit 5
gmake[4]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro'
/bin/mkdir -p `/usr/bin/dirname 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/unit_test/Makefile.in`
test -f 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/unit_test/Makefile.in
  ||  /bin/cp -p 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel
 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/unit_test/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh
 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT 
unit_test/Makefile
config.status: creating 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile
cd 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro
  &&  
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh
 macro all
Platform not defined for FreeBSD arm -- please fix me
/usr/local/bin/gmake -w -f 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module
 MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' 
IMPDEPS='' IMPFILES='' 
top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++
 
builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build
 
DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool
 DATATOOL_WRAPPER='' 
MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src
 all
gmake[5]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro'
gmake[5]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro'
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro'
/usr/local/bin/gmake -f 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl
 
srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro
 TMPL=macro -w export-headers
gmake[5]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro'
/usr/local/bin/gmake -f 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl
 
srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro
 TMPL=macro -w all
/usr/local/bin/gmake -w -f 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module
 MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' 
IMPDEPS='' IMPFILES='' 
top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++
 
builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build
 
DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool
 DATATOOL_WRAPPER='' 
MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src
 all
gmake[5]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro'
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:
 In function 'bool ncbi::objects::s_WholeWordReplaceNocase(std::string&, const 
string&, const string&)':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:61:84:
 warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, 
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, 
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
   61 |     size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, 
NStr::eNocase);
      |                                                                         
           ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11:
 note: declared here
 5212 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
      |           ^~~~
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:61:84:
 warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, 
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, 
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
   61 |     size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, 
NStr::eNocase);
      |                                                                         
           ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11:
 note: declared here
 5212 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
      |           ^~~~
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:74:103:
 warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, 
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, 
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
   74 |             pos = NStr::Find(val, find, pos + repl.length(), 
string::npos, NStr::eFirst, NStr::eNocase);
      |                                                                         
                              ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11:
 note: declared here
 5212 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
      |           ^~~~
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:74:103:
 warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, 
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, 
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
   74 |             pos = NStr::Find(val, find, pos + repl.length(), 
string::npos, NStr::eFirst, NStr::eNocase);
      |                                                                         
                              ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11:
 note: declared here
 5212 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
      |           ^~~~
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:76:91:
 warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, 
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, 
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
   76 |             pos = NStr::Find(val, find, pos + 1, string::npos, 
NStr::eFirst, NStr::eNocase);
      |                                                                         
                  ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11:
 note: declared here
 5212 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
      |           ^~~~
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:76:91:
 warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, 
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, 
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
   76 |             pos = NStr::Find(val, find, pos + 1, string::npos, 
NStr::eFirst, NStr::eNocase);
      |                                                                         
                  ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11:
 note: declared here
 5212 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
      |           ^~~~
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:
 In function 'bool ncbi::objects::s_ReplaceNocase(std::string&, const string&, 
const string&)':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:88:84:
 warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, 
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, 
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
   88 |     size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, 
NStr::eNocase);
      |                                                                         
           ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11:
 note: declared here
 5212 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
      |           ^~~~
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:88:84:
 warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, 
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, 
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
   88 |     size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, 
NStr::eNocase);
      |                                                                         
           ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11:
 note: declared here
 5212 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
      |           ^~~~
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:99:99:
 warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, 
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, 
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
   99 |         pos = NStr::Find(val, find, pos + repl.length(), string::npos, 
NStr::eFirst, NStr::eNocase);
      |                                                                         
                          ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11:
 note: declared here
 5212 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
      |           ^~~~
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:99:99:
 warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, 
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, 
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
   99 |         pos = NStr::Find(val, find, pos + repl.length(), string::npos, 
NStr::eFirst, NStr::eNocase);
      |                                                                         
                          ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11:
 note: declared here
 5212 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
      |           ^~~~
In file included from 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:158:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp:
 In member function 'ncbi::CTempString 
ncbi::objects::CString_constraint::x_GetConstraintString(ncbi::objects::CString_constraint::ECase)
 const':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp:479:1:
 warning: control reaches end of non-void function [-Wreturn-type]
  479 | }
      | ^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp:
 In member function 'ncbi::CTempString 
ncbi::objects::CString_constraint::x_GetCompareString(const 
ncbi::objects::CMatchString&, ncbi::objects::CString_constraint::ECase) const':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp:513:1:
 warning: control reaches end of non-void function [-Wreturn-type]
  513 | }
      | ^
qemu: uncaught target signal 11 (Segmentation fault) - core dumped
g++9: internal compiler error: Segmentation fault signal terminated program 
cc1plus
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://gcc.gnu.org/bugs/> for instructions.
gmake[5]: *** 
[/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.rules:88:
 macro__.o] Error 4
gmake[5]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro'
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro___.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp.
/usr/local/bin/g++9  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp 
-O2 -pipe  -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9  
-Wl,-rpath=/usr/local/lib/gcc9  -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE 
-D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL 
-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc
 
-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include 
 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp
 -o macro__.o 
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro'
FAILED: src/objects/macro/Makefile.macro.lib
gmake[5]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro'
/bin/rm -f libmacro.a .macro.dep .libmacro.a.stamp
/bin/rm -f 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmacro.a
 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.macro.dep
 \
    
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmacro-static.a
 
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.macro-static.dep
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: *** 
[/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.meta_l:318:
 all.nonusr] Error 2
gmake[4]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro'
gmake[3]: *** 
[/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.meta_r:41:
 all_r.real] Error 5
gmake[3]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects'
gmake[2]: *** 
[/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.meta_r:41:
 all_r.real] Error 5
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ncbi-blast+
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