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Please investigate the failure and submit a PR to fix
build.

Maintainer:     h2+fbsdpo...@fsfe.org
Last committer: jbe...@freebsd.org
Ident:          $FreeBSD: branches/2019Q4/biology/seqan-apps/Makefile 509290 
2019-08-19 15:35:27Z jbeich $
Log URL:        
http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/514178/logs/seqan-apps-2.4.0_8.log
Build URL:      
http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=514178
Log:

=>> Building biology/seqan-apps
build started at Thu Oct 10 09:05:32 UTC 2019
port directory: /usr/ports/biology/seqan-apps
package name: seqan-apps-2.4.0_8
building for: FreeBSD 120armv7-quarterly-job-24 12.0-RELEASE-p10 FreeBSD 
12.0-RELEASE-p10 1200086 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:      $FreeBSD: branches/2019Q4/biology/seqan-apps/Makefile 
509290 2019-08-19 15:35:27Z jbeich $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300040
Jail OSVERSION: 1200086
Job Id: 24

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---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
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MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for seqan-apps-2.4.0_8:
====> Options available for the radio ARCH: you can only select none or one of 
them
     SSE4=off: Use SSE4 and POPCNT instructions
     AVX2=off: Use SSE4, AVX2 and POPCNT instructions
     NATIVE=off: Use all available instruction sets (-march=native)
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
h2+fbsdpo...@fsfe.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/seqan-apps/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
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PATH=/wrkdirs/usr/ports/biology/seqan-apps/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
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OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  CC="gcc9" CFLAGS="-O2 -pipe  -fstack-protector-strong 
-Wl,-rpath=/usr/local/lib/gcc9 -fno-strict-aliasing "  CPP="cpp9" CPPFLAGS=""  
LDFLAG
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-L/usr/local/lib/gcc9 " LIBS=""  CXX="g++9" CXXFLAGS="-O2 -pipe  
-fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9  
-Wl,-rpath=/usr/local/lib/gcc9 "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release" RM_I386="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local 
 RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqan-apps"  
EXAMPLESDIR="share/examples/seqan-apps"  DATADIR="share/seqan-apps"  
WWWDIR="www/seqan-apps"  ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/seqan-apps 
DOCSDIR=/usr/local/share/doc/seqan-apps 
EXAMPLESDIR=/usr/local/share/examples/seqan-apps  
WWWDIR=/usr/local/www/seqan-apps ETCDIR=/usr/local/etc/seqan-apps
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--Resource limits--
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--End resource limits--
=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   seqan-apps-2.4.0_8 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.12.0.txz
[120armv7-quarterly-job-24] Installing pkg-1.12.0...
[120armv7-quarterly-job-24] Extracting pkg-1.12.0: .......... done
===>   seqan-apps-2.4.0_8 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of seqan-apps-2.4.0_8
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-apps-2.4.0_8 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-apps-2.4.0_8 for building
=> SHA256 Checksum OK for seqan-seqan-seqan-v2.4.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
<snip>
      |              ^~~~~~~~~~~~~~~
In file included from 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/sequence.h:98,
                 from 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/file.h:58,
                 from 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:45:
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5:
 note: because 'seqan::Segment<const char*, seqan::PrefixSegment>' has 
user-provided 'seqan::Segment<THost, seqan::PrefixSegment>& 
seqan::Segment<THost, seqan::PrefixSegment>::operator=(const 
seqan::Segment<THost, seqan::PrefixSegment>&) [with THost_ = const char*]'
  117 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/modifier.h:75,
                 from 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/file.h:59,
                 from 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/stream.h:62,
                 from 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46,
                 from 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:45:
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53:
 note:   initializing argument 1 of 'seqan::ModifiedString<THost, 
seqan::ModView<TFunctor> >::ModifiedString(typename 
seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const 
char*, seqan::PrefixSegment>; TFunctor = seqan::FunctorLowcase<const char, 
const char>; typename seqan::Parameter_<TContainer>::Type = 
seqan::Segment<const char*, seqan::PrefixSegment>]'
  150 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[133/133] : && /usr/local/bin/g++9  -O2 -pipe  -fstack-protector-strong 
-Wl,-rpath=/usr/local/lib/gcc9  -Wl,-rpath=/usr/local/lib/gcc9  -W -Wall 
-pedantic -fopenmp -O2 -pipe  -fstack-protector-strong 
-Wl,-rpath=/usr/local/lib/gcc9  -Wl,-rpath=/usr/local/lib/gcc9  
-fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 
-s -Wl,--whole-archive -lpthread -Wl,--no-whole-archive 
apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o  -o 
bin/mason_materializer  -lexecinfo -lelf -lz apps/mason2/libmason_sim.a 
-lexecinfo -lelf -lz && :
===========================================================================
=======================<phase: run-depends    >============================
===>   seqan-apps-2.4.0_8 depends on executable: gcc9 - found
===========================================================================
=======================<phase: stage          >============================
===>  Staging for seqan-apps-2.4.0_8
===>   Generating temporary packing list
[0/1] cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && 
/usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/alf
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/alf/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/alf/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/alf/example/small.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/bisar
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/casbar
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/four2three
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/bs_tools/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/bs_tools/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/dfi
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/example/fasta1.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/example/fasta2.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/fx_bam_coverage
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fx_tools/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fx_tools/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/gustaf
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/gustaf_mate_joining
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/adeno.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/adeno_modified.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/adeno_modified_reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/stellar.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/insegt
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/annoOutput.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/annotations.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/readOutput.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/tupleOutput.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_frag_sequencing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_genome
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_materializer
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_methylation
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_simulator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_splicing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_variator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_frag_sequencing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_genome
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_materializer
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_methylation
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_simulator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_splicing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_variator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/example/adeno_virus.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/micro_razers
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/example/genome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/example/reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/example/reads.fa.result
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/bam2roi
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_feature_projection
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_plot_thumbnails
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/bed_sort.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/gff_sort.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_sort.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_plot_9.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/plot.awk
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/ps2pswLinks.gawk
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/example/dmel.bed
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/example/dmel.gtf
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/example/example.bam
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/R/ngsroi_0.1.tar.gz
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/R/ngsroi_0.1.zip
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/pair_align
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/pair_align/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/pair_align/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/param_chooser
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/param_chooser/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/param_chooser/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_prepare_sam
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_build_gold_standard
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_evaluate
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_prepare_sam
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_build_gold_standard
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_evaluate
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rabema/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rabema/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/razers
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/example/genome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/example/reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/example/reads2.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/razers3
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/example/genome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/example/reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/example/reads2.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rep_sep
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rep_sep/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rep_sep/README
[1/2] cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && 
/wrkdirs/usr/ports/biology/seqan-apps/work/.build/bin/sak --export-help=man > 
sak.1
[2/2] cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && 
/wrkdirs/usr/ports/biology/seqan-apps/work/.build/bin/sak --export-help=txt > 
README.sak.txt
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/sak
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sak/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sak/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sak/README.sak.txt
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/man/man1/sak.1
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/sam2matrix
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sam2matrix/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sam2matrix/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/samcat
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/samcat/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/samcat/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/s4_search
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/s4_join
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/searchjoin/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/searchjoin/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/seqan_tcoffee
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqan_tcoffee/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqan_tcoffee/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqan_tcoffee/example/seq.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/seqcons2
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqcons2/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqcons2/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/sgip
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_m2D_m196.A01
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.A00
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.A01
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.B00
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.B01
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/latin-4
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/lattice-4
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/sts-7
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/snp_store
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/example/exampleGenome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/example/exampleReads.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/stellar
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/example/NC_001474.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/example/NC_001477.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/example/reads.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/tree_recon
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/tree_recon/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/tree_recon/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/tree_recon/example/example.dist
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/yara_indexer
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/yara_mapper
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/yara/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/yara/README.rst
====> Compressing man pages (compress-man)
===========================================================================
=======================<phase: package        >============================
===>  Building package for seqan-apps-2.4.0_8
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/compute_gain:No 
such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/fiona:No such 
file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/splazers:No such 
file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fiona/LICENSE:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fiona/README:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fiona/example/reads.fa:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/LICENSE:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/README:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/example/genome.fa:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/example/reads.fa:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/example/reads.fa.result:No
 such file or directory
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/seqan-apps
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