You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     y...@freebsd.org
Last committer: ger...@freebsd.org
Ident:          $FreeBSD: head/biology/ncbi-cxx-toolkit/Makefile 507372 
2019-07-26 20:46:53Z gerald $
Log URL:        
http://beefy17.nyi.freebsd.org/data/head-i386-default/p514206_s353378/logs/ncbi-cxx-toolkit-21.0.0_2.log
Build URL:      
http://beefy17.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p514206_s353378
Log:

=>> Building biology/ncbi-cxx-toolkit
build started at Fri Oct 11 06:43:02 UTC 2019
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-21.0.0_2
building for: FreeBSD head-i386-default-job-10 13.0-CURRENT FreeBSD 
13.0-CURRENT 1300050 i386
maintained by: y...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/ncbi-cxx-toolkit/Makefile 507372 
2019-07-26 20:46:53Z gerald $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300040
Jail OSVERSION: 1300050
Job Id: 10




!!! Jail is newer than host. (Jail: 1300050, Host: 1300040) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/sbin/pkg - not 
found
===>   Installing existing package /packages/All/pkg-1.12.0.txz
[head-i386-default-job-10] Installing pkg-1.12.0...
[head-i386-default-job-10] Extracting pkg-1.12.0: .......... done
===>   ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ncbi-cxx-toolkit-21.0.0_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
=> SHA256 Checksum OK for ncbi_cxx--21_0_0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
===>  Extracting for ncbi-cxx-toolkit-21.0.0_2
=> SHA256 Checksum OK for ncbi_cxx--21_0_0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for ncbi-cxx-toolkit-21.0.0_2
===>  Applying FreeBSD patches for ncbi-cxx-toolkit-21.0.0_2
===========================================================================
=======================<phase: build-depends  >============================
===>   ncbi-cxx-toolkit-21.0.0_2 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_3.txz
[head-i386-default-job-10] Installing gmake-4.2.1_3...
[head-i386-default-job-10] `-- Installing gettext-runtime-0.20.1...
[head-i386-default-job-10] |   `-- Installing indexinfo-0.3.1...
[head-i386-default-job-10] |   `-- Extracting indexinfo-0.3.1: .... done
<snip>
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:50:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/feat_ci.hpp:37:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/annot_types_ci.hpp:38:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/impl/annot_collector.hpp:510:5:
 warning: 'auto_ptr<ncbi::objects::CAnnotMappingCollector>' is deprecated 
[-Wdeprecated-declarations]
    auto_ptr<CAnnotMappingCollector> m_MappingCollector;
    ^
/usr/include/c++/v1/memory:2079:28: note: 
'auto_ptr<ncbi::objects::CAnnotMappingCollector>' has been explicitly marked 
deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:944:39: note: expanded from macro 
'_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:933:48: note: expanded from macro 
'_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:50:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/feat_ci.hpp:37:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/annot_types_ci.hpp:38:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/impl/annot_collector.hpp:518:5:
 warning: 'auto_ptr<std::__1::set<ncbi::CConstRef<ncbi::objects::CSeq_loc, 
ncbi::CObjectCounterLocker>, 
std::__1::less<ncbi::CConstRef<ncbi::objects::CSeq_loc, 
ncbi::CObjectCounterLocker> >, 
std::__1::allocator<ncbi::CConstRef<ncbi::objects::CSeq_loc, 
ncbi::CObjectCounterLocker> > > >' is deprecated [-Wdeprecated-declarations]
    auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
    ^
/usr/include/c++/v1/memory:2079:28: note: 
'auto_ptr<std::__1::set<ncbi::CConstRef<ncbi::objects::CSeq_loc, 
ncbi::CObjectCounterLocker>, 
std::__1::less<ncbi::CConstRef<ncbi::objects::CSeq_loc, 
ncbi::CObjectCounterLocker> >, 
std::__1::allocator<ncbi::CConstRef<ncbi::objects::CSeq_loc, 
ncbi::CObjectCounterLocker> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:944:39: note: expanded from macro 
'_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:933:48: note: expanded from macro 
'_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:50:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/feat_ci.hpp:37:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/annot_types_ci.hpp:38:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/impl/annot_collector.hpp:523:13:
 warning: 'auto_ptr<std::__1::set<ncbi::objects::CAnnotName, 
std::__1::less<ncbi::objects::CAnnotName>, 
std::__1::allocator<ncbi::objects::CAnnotName> > >' is deprecated 
[-Wdeprecated-declarations]
    mutable auto_ptr<TAnnotNames> m_AnnotNames;
            ^
/usr/include/c++/v1/memory:2079:28: note: 
'auto_ptr<std::__1::set<ncbi::objects::CAnnotName, 
std::__1::less<ncbi::objects::CAnnotName>, 
std::__1::allocator<ncbi::objects::CAnnotName> > >' has been explicitly marked 
deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:944:39: note: expanded from macro 
'_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:933:48: note: expanded from macro 
'_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:54:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/create_defline.hpp:39:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objects/seqfeat/BioSource.hpp:43:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objects/seqfeat/SubSource.hpp:233:12:
 warning: 'auto_ptr<ncbi::objects::CLatLonCountryMap>' is deprecated 
[-Wdeprecated-declarations]
    static auto_ptr<CLatLonCountryMap> m_LatLonCountryMap;
           ^
/usr/include/c++/v1/memory:2079:28: note: 
'auto_ptr<ncbi::objects::CLatLonCountryMap>' has been explicitly marked 
deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:944:39: note: expanded from macro 
'_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:933:48: note: expanded from macro 
'_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:54:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/create_defline.hpp:39:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objects/seqfeat/BioSource.hpp:43:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objects/seqfeat/SubSource.hpp:234:12:
 warning: 'auto_ptr<ncbi::objects::CLatLonCountryMap>' is deprecated 
[-Wdeprecated-declarations]
    static auto_ptr<CLatLonCountryMap> m_LatLonWaterMap;
           ^
/usr/include/c++/v1/memory:2079:28: note: 
'auto_ptr<ncbi::objects::CLatLonCountryMap>' has been explicitly marked 
deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:944:39: note: expanded from macro 
'_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:933:48: note: expanded from macro 
'_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:54:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/create_defline.hpp:41:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/feature.hpp:40:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objects/seqfeat/Gb_qual.hpp:51:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/serial/iterator.hpp:467:5:
 warning: 'auto_ptr<std::__1::set<const void *, std::__1::less<const void *>, 
std::__1::allocator<const void *> > >' is deprecated [-Wdeprecated-declarations]
    auto_ptr<TVisitedObjects> m_VisitedObjects;
    ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<std::__1::set<const void *, 
std::__1::less<const void *>, std::__1::allocator<const void *> > >' has been 
explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:944:39: note: expanded from macro 
'_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:933:48: note: expanded from macro 
'_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:54:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/create_defline.hpp:42:
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/indexer.hpp:43:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/object_manager.hpp:276:5:
 warning: 'auto_ptr<ncbi::CPluginManager<ncbi::objects::CDataLoader> >' is 
deprecated [-Wdeprecated-declarations]
    auto_ptr<TPluginManager> m_PluginManager;
    ^
/usr/include/c++/v1/memory:2079:28: note: 
'auto_ptr<ncbi::CPluginManager<ncbi::objects::CDataLoader> >' has been 
explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:944:39: note: expanded from macro 
'_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:933:48: note: expanded from macro 
'_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:364:9:
 warning: 'auto_ptr<ncbi::objects::CFeat_CI>' is deprecated 
[-Wdeprecated-declarations]
        auto_ptr<CFeat_CI> &feat_ci,
        ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<ncbi::objects::CFeat_CI>' 
has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:944:39: note: expanded from macro 
'_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:933:48: note: expanded from macro 
'_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:862:5:
 warning: 'auto_ptr<ncbi::objects::sequence::CDeflineGenerator>' is deprecated 
[-Wdeprecated-declarations]
    auto_ptr<sequence::CDeflineGenerator> m_Gen;
    ^
/usr/include/c++/v1/memory:2079:28: note: 
'auto_ptr<ncbi::objects::sequence::CDeflineGenerator>' has been explicitly 
marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:944:39: note: expanded from macro 
'_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:933:48: note: expanded from macro 
'_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:40:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/algo/blast/blastinput/blast_input_aux.hpp:64:5:
 warning: 'auto_ptr<std::__1::basic_ostream<char> >' is deprecated 
[-Wdeprecated-declarations]
    auto_ptr<CNcbiOstream> m_FileStream;
    ^
/usr/include/c++/v1/memory:2079:28: note: 
'auto_ptr<std::__1::basic_ostream<char> >' has been explicitly marked 
deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:944:39: note: expanded from macro 
'_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:933:48: note: expanded from macro 
'_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:70:5:
 warning: 'auto_ptr<ncbi::CArgDescriptions>' is deprecated 
[-Wdeprecated-declarations]
    auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
    ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<ncbi::CArgDescriptions>' 
has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:944:39: note: expanded from macro 
'_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:933:48: note: expanded from macro 
'_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
18 warnings generated.
ld: error: 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib/libvalid.so:
 undefined reference to ncbi::CRegexp::CRegexp(ncbi::CTempStringEx, unsigned 
int)
ld: error: 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib/libvalid.so:
 undefined reference to ncbi::CRegexp::~CRegexp()
clang-cpp: error: linker command failed with exit code 1 (use -v to see 
invocation)
gmake[7]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/Makefile.app:156:
 blastinput_demo] Error 1
gmake[7]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp.
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE 
-D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/util/lmdb
 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/util/lmdb
 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp
 -o blastinput_demo.o 
/usr/bin/c++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/local/lib 
-Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O 
blastinput_demo.o 
-Wl,-rpath-link,/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib
 
-L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib
 -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat 
-lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup 
-lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml 
-lblastxml2 -lxcgi -lxhtml -lentrez2cli -lentrez2 -lproteinkmer -lxblast 
-lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask 
-lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread 
-lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat 
-ltables -llmdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 
-lncbi_xreader_cache -ldbapi
 _driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection 
-lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub 
-lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -pthread -lz 
-lz -lbz2 -lm -pthread -o blastinput_demo
gmake[7]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
FAILED: src/algo/blast/blastinput/demo/Makefile.blastinput_demo.app
gmake[7]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
gmake[7]: warning: -jN forced in submake: disabling jobserver mode.
/bin/rm -f blastinput_demo .blastinput_demo.stamp
gmake[7]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
gmake[6]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_l:304:
 all.nonusr] Error 2
gmake[6]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
gmake[5]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41:
 all_r.real] Error 5
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput'
gmake[4]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41:
 all_r.real] Error 5
gmake[4]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast'
gmake[3]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41:
 all_r.real] Error 5
gmake[3]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo'
gmake[2]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41:
 all_r.real] Error 5
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ncbi-cxx-toolkit
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