You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     j...@freebsd.org
Last committer: jbe...@freebsd.org
Ident:          $FreeBSD: head/biology/pbcopper/Makefile 509290 2019-08-19 
15:35:27Z jbeich $
Log URL:        
http://thunderx1.nyi.freebsd.org/data/head-arm64-default/p515946_s354143/logs/pbcopper-0.4.1_3.log
Build URL:      
http://thunderx1.nyi.freebsd.org/build.html?mastername=head-arm64-default&build=p515946_s354143
Log:

=>> Building biology/pbcopper
build started at Sat Nov  9 10:30:46 UTC 2019
port directory: /usr/ports/biology/pbcopper
package name: pbcopper-0.4.1_3
building for: FreeBSD head-arm64-default-job-15 13.0-CURRENT FreeBSD 
13.0-CURRENT 1300054 arm64
maintained by: j...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/pbcopper/Makefile 509290 2019-08-19 
15:35:27Z jbeich $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300002
Jail OSVERSION: 1300054
Job Id: 15




!!! Jail is newer than host. (Jail: 1300054, Host: 1300002) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1300054
UNAME_v=FreeBSD 13.0-CURRENT 1300054
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/head-arm64-default/ref
POUDRIERE_BUILD_TYPE=bulk
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SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-arm64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-arm64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-arm64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix /usr/local  --mandir man  --infodir share/info --buildtype release  
--strip  _build
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  
HOME=/wrkdirs/usr/ports/biology/pbcopper/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/pbcopper/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" 
LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  
HOME=/wrkdirs/usr/ports/biology/pbcopper/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/pbcopper/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
DESTDIR=/wrkdirs/usr/ports/biology/pbcopper/work/stage LANG=en_US.UTF-8 
LC_ALL=en_US.UTF-8 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 
-pipe  -fstack-protector-strong -isystem /usr/local/include 
-fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-isystem /usr/local/include"  
LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="c++" 
CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include 
-fno-strict-aliasing  -isystem /usr/local/include "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  
 BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib 
DOCSDIR="share/doc/pbcopper"  EXAMPLESDIR="share/examples/pbcopper"  
DATADIR="share/pbcopper"  WWWDIR="www/pbcopper"  ETCDIR="etc/pbcopper"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/pbcopper 
DOCSDIR=/usr/local/share/doc/pbcopper 
EXAMPLESDIR=/usr/local/share/examples/pbcopper  WWWDIR=/usr/local/www/pbcopper 
ETCDIR=/usr/local/etc/pbcopper
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 9.0.0 (tags/RELEASE_900/final 372316) 
(based on LLVM 9.0.0) Target: aarch64-unknown-freebsd13.0 Thread model: posix 
InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
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372316) (based on LLVM 9.0.0) Target: aarch64-unknown-freebsd13.0 Thread model: 
posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" 
"/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" 
"/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" 
"-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" 
"-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 9.0.0 (tags/RELEASE_900/final 
372316) (based on LLVM 9.0.0) Target: aarch64-unknown-freebsd13.0 Thread model: 
posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=aarch64
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300054
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  1048576
stack size              (kbytes, -s)  1048576
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   pbcopper-0.4.1_3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.12.0.txz
[head-arm64-default-job-15] Installing pkg-1.12.0...
[head-arm64-default-job-15] Extracting pkg-1.12.0: .......... done
===>   pbcopper-0.4.1_3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of pbcopper-0.4.1_3
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_3 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_3 for building
=> SHA256 Checksum OK for PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_3 for building
===>  Extracting for pbcopper-0.4.1_3
=> SHA256 Checksum OK for PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for pbcopper-0.4.1_3
===>  Applying FreeBSD patches for pbcopper-0.4.1_3
===========================================================================
=======================<phase: build-depends  >============================
===>   pbcopper-0.4.1_3 depends on executable: meson - not found
===>   Installing existing package /packages/All/meson-0.52.0.txz
[head-arm64-default-job-15] Installing meson-0.52.0...
[head-arm64-default-job-15] `-- Installing ninja-1.9.0,2...
[head-arm64-default-job-15] |   `-- Installing python36-3.6.9...
[head-arm64-default-job-15] |   | `-- Installing gettext-runtime-0.20.1...
[head-arm64-default-job-15] |   |   `-- Installing indexinfo-0.3.1...
[head-arm64-default-job-15] |   |   `-- Extracting indexinfo-0.3.1: .... done
[head-arm64-default-job-15] |   | `-- Extracting gettext-runtime-0.20.1: 
.......... done
[head-arm64-default-job-15] |   | `-- Installing libffi-3.2.1_3...
[head-arm64-default-job-15] |   | `-- Extracting libffi-3.2.1_3: .......... done
[head-arm64-default-job-15] |   | `-- Installing readline-8.0.0...
[head-arm64-default-job-15] |   | `-- Extracting readline-8.0.0: .......... done
[head-arm64-default-job-15] |   `-- Extracting python36-3.6.9: .......... done
[head-arm64-default-job-15] `-- Extracting ninja-1.9.0,2: ......... done
[head-arm64-default-job-15] `-- Installing py36-setuptools-41.4.0...
[head-arm64-default-job-15] `-- Extracting py36-setuptools-41.4.0: .......... 
done
[head-arm64-default-job-15] Extracting meson-0.52.0: .......... done
=====
Message from python36-3.6.9:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py36-gdbm       databases/py-gdbm@py36
py36-sqlite3    databases/py-sqlite3@py36
py36-tkinter    x11-toolkits/py-tkinter@py36
===>   pbcopper-0.4.1_3 depends on executable: meson - found
===>   Returning to build of pbcopper-0.4.1_3
===>   pbcopper-0.4.1_3 depends on executable: ninja - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   pbcopper-0.4.1_3 depends on shared library: libboost_regex.so - not found
===>   Installing existing package /packages/All/boost-libs-1.71.0_2.txz
[head-arm64-default-job-15] Installing boost-libs-1.71.0_2...
[head-arm64-default-job-15] `-- Installing icu-65.1,1...
[head-arm64-default-job-15] `-- Extracting icu-65.1,1: .......... done
[head-arm64-default-job-15] Extracting boost-libs-1.71.0_2: .......... done
=====
Message from boost-libs-1.71.0_2:

--
You have built the Boost library with thread support.

Don't forget to add -pthread to your linker options when
linking your code.
===>   pbcopper-0.4.1_3 depends on shared library: libboost_regex.so - found 
(/usr/local/lib/libboost_regex.so)
===>   Returning to build of pbcopper-0.4.1_3
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for pbcopper-0.4.1_3
The Meson build system
Version: 0.52.0
Source dir: /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1
Build dir: /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/_build
Build type: native build
Project name: pbcopper
Project version: 0.4.1
Appending CXXFLAGS from environment: '-O2 -pipe -fstack-protector-strong 
-isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include '
Appending LDFLAGS from environment: ['-fstack-protector-strong']
Appending CPPFLAGS from environment: '-isystem /usr/local/include'
Appending CXXFLAGS from environment: '-O2 -pipe -fstack-protector-strong 
-isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include '
Appending LDFLAGS from environment: ['-fstack-protector-strong']
Appending CPPFLAGS from environment: '-isystem /usr/local/include'
C++ compiler for the host machine: c++ (clang 9.0.0 "FreeBSD clang version 
9.0.0 (tags/RELEASE_900/final 372316) (based on LLVM 9.0.0)")
C++ linker for the host machine: lld 9.0.0
Host machine cpu family: aarch64
Host machine cpu: aarch64
Compiler for C++ supports arguments -Wduplicated-cond: NO 
Compiler for C++ supports arguments -Wduplicated-branches: NO 
Compiler for C++ supports arguments -Wlogical-op: NO 
Compiler for C++ supports arguments -Wrestrict: NO 
Compiler for C++ supports arguments -Wnull-dereference: YES 
Compiler for C++ supports arguments -Wuseless-cast: NO 
Compiler for C++ supports arguments -Wdouble-promotion: YES 
Compiler for C++ supports arguments -Wshadow: YES 
Compiler for C++ supports arguments -Wformat=1: NO 
Run-time dependency threads found: YES 
Run-time dependency Boost found: YES 1.71
Configuring PbcopperVersion.cpp using configuration
Build targets in project: 3
Found ninja-1.9.0 at /usr/local/bin/ninja
===========================================================================
=======================<phase: build          >============================
===>  Building for pbcopper-0.4.1_3
[1/22] /usr/local/bin/meson --internal vcstagger 
../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 0.4.1 
/wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/src/utility 
@COPPER_GIT_SHA1@ '(.*)' 
/wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/src/utility/git 
describe --always '--dirty=*'
[2/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' 
-MF 
'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o.d' 
-o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' 
-c src/utility/PbcopperGitHash.cpp
[3/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -c ../src/cli/CLI.cpp
[4/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -c ../src/cli/Parser.cpp
[5/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -c ../src/cli/HelpPrinter.cpp
[6/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -c ../src/cli/Interface.cpp
[7/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/cli_Option.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -c ../src/cli/Option.cpp
[8/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/cli_Results.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -c ../src/cli/Results.cpp
[9/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -c 
../src/cli/VersionPrinter.cpp
[10/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -c 
../src/cli/toolcontract/JsonPrinter.cpp
[11/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -c 
../src/cli/toolcontract/ResolvedToolContract.cpp
[12/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -c ../src/data/Cigar.cpp
[13/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -c 
../src/data/CigarOperation.cpp
[14/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -c ../src/data/MovieName.cpp
[15/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -c 
../src/data/RSMovieName.cpp
[16/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -c ../src/logging/Logging.cpp
[17/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' -MF 
'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o.d' -o 
'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' -c 
../src/utility/CallbackTimer.cpp
[18/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include 
-Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread 
-Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 
'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' 
-MF 
'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o.d' 
-o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' 
-c src/utility/PbcopperVersion.cpp
[19/22] c++  -o src/libpbcopper.so.0.4.1 
'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' 
'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' 
'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' 
'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' 
'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' 
'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' 
'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' 
'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' 
'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' 
'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' 
'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' 
'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' 
'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' 
'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' 
'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' 
'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' 
'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' 
-Wl,--as-needed -Wl,--no-undefined
  -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.0.4.1 
-Wl,--end-group -O2 -pipe -fstack-protector-strong -isystem /usr/local/include 
-fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong 
-pthread
[20/22] /usr/local/bin/meson --internal symbolextractor 
src/libpbcopper.so.0.4.1 
'src/25a6634@@pbcopper@sha/libpbcopper.so.0.4.1.symbols' 
[21/22] c++ -Iexamples/cli_demo/c7429bd@@cli_demo@exe -Iexamples/cli_demo 
-I../examples/cli_demo -Iinclude -I../include -Xclang -fcolor-diagnostics 
-DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor 
-Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem 
/usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem 
/usr/local/include -pthread -MD -MQ 
'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -MF 
'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o.d' -o 
'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -c 
../examples/cli_demo/main.cpp
FAILED: examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o 
c++ -Iexamples/cli_demo/c7429bd@@cli_demo@exe -Iexamples/cli_demo 
-I../examples/cli_demo -Iinclude -I../include -Xclang -fcolor-diagnostics 
-DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor 
-Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem 
/usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem 
/usr/local/include -pthread -MD -MQ 
'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -MF 
'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o.d' -o 
'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -c 
../examples/cli_demo/main.cpp
In file included from ../examples/cli_demo/main.cpp:2:
In file included from ../include/pbcopper/cli/CLI.h:12:
In file included from ../include/pbcopper/cli/Interface.h:11:
In file included from ../include/pbcopper/cli/Option.h:14:
In file included from ../include/pbcopper/json/JSON.h:7:
./include/pbcopper/json/internal/json.hpp:1229:9: error: static_assert failed 
due to requirement 'sizeof(nlohmann::basic_json<std::map, std::vector, 
std::__1::basic_string<char>, bool, long, unsigned long, double, 
std::allocator, adl_serializer>) == 0' "could not find from_json() method in 
T's namespace"
        static_assert(sizeof(BasicJsonType) == 0,
        ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~
./include/pbcopper/json/internal/json.hpp:1244:16: note: in instantiation of 
function template specialization 
'nlohmann::detail::from_json_fn::call<nlohmann::basic_json<std::map, 
std::vector, std::__1::basic_string<char>, bool, long, unsigned long, double, 
std::allocator, adl_serializer>, std::__1::basic_string_view<char, 
std::__1::char_traits<char> > >' requested here
        return call(j, val, priority_tag<1> {});
               ^
./include/pbcopper/json/internal/json.hpp:10801:9: note: in instantiation of 
function template specialization 
'nlohmann::detail::from_json_fn::operator()<nlohmann::basic_json<std::map, 
std::vector, std::__1::basic_string<char>, bool, long, unsigned long, double, 
std::allocator, adl_serializer>, std::__1::basic_string_view<char, 
std::__1::char_traits<char> > >' requested here
        ::nlohmann::from_json(std::forward<BasicJsonType>(j), val);
        ^
./include/pbcopper/json/internal/json.hpp:13329:36: note: in instantiation of 
function template specialization 
'nlohmann::adl_serializer<std::__1::basic_string_view<char, 
std::__1::char_traits<char> >, void>::from_json<const 
nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, 
long, unsigned long, double, std::allocator, adl_serializer> &, 
std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested 
here
        JSONSerializer<ValueType>::from_json(*this, ret);
                                   ^
./include/pbcopper/json/internal/json.hpp:13591:16: note: in instantiation of 
function template specialization 'nlohmann::basic_json<std::map, std::vector, 
std::__1::basic_string<char>, bool, long, unsigned long, double, 
std::allocator, adl_serializer>::get<std::__1::basic_string_view<char, 
std::__1::char_traits<char> >, std::__1::basic_string_view<char, 
std::__1::char_traits<char> >, 0>' requested here
        return get<ValueType>();
               ^
/usr/include/c++/v1/string:887:29: note: in instantiation of function template 
specialization 'nlohmann::basic_json<std::map, std::vector, 
std::__1::basic_string<char>, bool, long, unsigned long, double, 
std::allocator, adl_serializer>::operator 
basic_string_view<std::__1::basic_string_view<char, std::__1::char_traits<char> 
>, 0>' requested here
        {__self_view __sv = __t; return assign(__sv);}
                            ^
./examples/cli_demo/main.cpp:82:15: note: in instantiation of function template 
specialization 'std::__1::basic_string<char, std::__1::char_traits<char>, 
std::__1::allocator<char> >::operator=<nlohmann::basic_json<std::map, 
std::vector, std::__1::basic_string<char>, bool, long, unsigned long, double, 
std::allocator, adl_serializer>, void>' requested here
    s.tempDir = args["temp_dir"];
              ^
1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/pbcopper
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