You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     mz...@e-mail.ne.jp
Last committer: fern...@freebsd.org
Ident:          $FreeBSD: head/biology/muscle/Makefile 522911 2020-01-13 
17:42:22Z fernape $
Log URL:        
http://beefy18.nyi.freebsd.org/data/head-amd64-default/p522982_s356710/logs/muscle-3.8.1551.log
Build URL:      
http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p522982_s356710
Log:

=>> Building biology/muscle
build started at Tue Jan 14 12:57:21 UTC 2020
port directory: /usr/ports/biology/muscle
package name: muscle-3.8.1551
building for: FreeBSD head-amd64-default-job-06 13.0-CURRENT FreeBSD 
13.0-CURRENT 1300076 amd64
maintained by: mz...@e-mail.ne.jp
Makefile ident:      $FreeBSD: head/biology/muscle/Makefile 522911 2020-01-13 
17:42:22Z fernape $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300062
Jail OSVERSION: 1300076
Job Id: 06




!!! Jail is newer than host. (Jail: 1300076, Host: 1300062) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
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USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool
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POUDRIEREPATH=/usr/local/bin/poudriere
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---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
mz...@e-mail.ne.jp
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/muscle/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/muscle/work  
HOME=/wrkdirs/usr/ports/biology/muscle/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/muscle/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/muscle/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/muscle/work  
HOME=/wrkdirs/usr/ports/biology/muscle/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/muscle/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  
-fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  
LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe 
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 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib 
DOCSDIR="share/doc/muscle"  EXAMPLESDIR="share/examples/muscle"  
DATADIR="share/muscle"  WWWDIR="www/muscle"  ETCDIR="etc/muscle"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/muscle 
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EXAMPLESDIR=/usr/local/share/examples/muscle  WWWDIR=/usr/local/www/muscle 
ETCDIR=/usr/local/etc/muscle
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 9.0.1 
(g...@github.com:llvm/llvm-project.git 
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x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin 
"/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" 
"--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" 
"/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" 
"-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" 
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OSREL=13.0
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#### Misc Poudriere ####
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UID=0
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file size           (512-blocks, -f)  unlimited
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stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
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virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   muscle-3.8.1551 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.12.0.txz
[head-amd64-default-job-06] Installing pkg-1.12.0...
[head-amd64-default-job-06] Extracting pkg-1.12.0: .......... done
===>   muscle-3.8.1551 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of muscle-3.8.1551
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License PD accepted by the user
=> muscle_src_3.8.1551.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch http://www.drive5.com/muscle/muscle_src_3.8.1551.tar.gz
muscle_src_3.8.1551.tar.gz                             185 kB  973 kBps    00s
===> Fetching all distfiles required by muscle-3.8.1551 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by muscle-3.8.1551 for building
=> SHA256 Checksum OK for muscle_src_3.8.1551.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by muscle-3.8.1551 for building
===>  Extracting for muscle-3.8.1551
=> SHA256 Checksum OK for muscle_src_3.8.1551.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for muscle-3.8.1551
===>   Converting DOS text files to UNIX text files
===>  Applying FreeBSD patches for muscle-3.8.1551
===========================================================================
=======================<phase: build-depends  >============================
===>   muscle-3.8.1551 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_3.txz
[head-amd64-default-job-06] Installing gmake-4.2.1_3...
[head-amd64-default-job-06] `-- Installing gettext-runtime-0.20.1...
[head-amd64-default-job-06] |   `-- Installing indexinfo-0.3.1...
[head-amd64-default-job-06] |   `-- Extracting indexinfo-0.3.1: .... done
<snip>
alpha.cpp:84:10: warning: enumeration value 'ALPHA_Undefined' not handled in 
switch [-Wswitch]
        switch (Alpha)
                ^
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  bittraceback.cpp -o 
bittraceback.o
1 warning generated.
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  blosum62.cpp -o blosum62.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  blosumla.cpp -o blosumla.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  clust.cpp -o clust.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  cluster.cpp -o cluster.o
clust.cpp:167:10: warning: enumeration value 'JOIN_Undefined' not handled in 
switch [-Wswitch]
        switch (m_JoinStyle)
                ^
clust.cpp:295:10: warning: enumeration value 'LINKAGE_Undefined' not handled in 
switch [-Wswitch]
        switch (m_CentroidStyle)
                ^
clust.cpp:611:10: warning: enumeration value 'JOIN_Undefined' not handled in 
switch [-Wswitch]
        switch (m_JoinStyle)
                ^
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  clwwt.cpp -o clwwt.o
3 warnings generated.
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  color.cpp -o color.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  cons.cpp -o cons.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  diaglist.cpp -o diaglist.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  diffobjscore.cpp -o 
diffobjscore.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  diffpaths.cpp -o diffpaths.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  difftrees.cpp -o difftrees.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  difftreese.cpp -o difftreese.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  distcalc.cpp -o distcalc.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  distfunc.cpp -o distfunc.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  distpwkimura.cpp -o 
distpwkimura.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  domuscle.cpp -o domuscle.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  dosp.cpp -o dosp.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  dpreglist.cpp -o dpreglist.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  drawtree.cpp -o drawtree.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  edgelist.cpp -o edgelist.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  enumopts.cpp -o enumopts.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  enumtostr.cpp -o enumtostr.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  estring.cpp -o estring.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  fasta.cpp -o fasta.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  fasta2.cpp -o fasta2.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  fastclust.cpp -o fastclust.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  fastdist.cpp -o fastdist.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  fastdistjones.cpp -o 
fastdistjones.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  fastdistkbit.cpp -o 
fastdistkbit.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  fastdistkmer.cpp -o 
fastdistkmer.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  fastdistmafft.cpp -o 
fastdistmafft.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  fastdistnuc.cpp -o fastdistnuc.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  fastscorepath2.cpp -o 
fastscorepath2.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  finddiags.cpp -o finddiags.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  finddiagsn.cpp -o finddiagsn.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  glbalign.cpp -o glbalign.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  glbalign352.cpp -o glbalign352.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  glbaligndiag.cpp -o 
glbaligndiag.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  glbalignle.cpp -o glbalignle.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  glbalignsimple.cpp -o 
glbalignsimple.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  glbalignsp.cpp -o glbalignsp.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  glbalignspn.cpp -o glbalignspn.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  glbalignss.cpp -o glbalignss.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  glbalndimer.cpp -o glbalndimer.o
glbalndimer.cpp:123:10: warning: enumeration values 'PPSCORE_Undefined' and 
'PPSCORE_SPN' not handled in switch [-Wswitch]
        switch (g_PPScore)
                ^
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  globals.cpp -o globals.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  globalslinux.cpp -o 
globalslinux.o
1 warning generated.
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  globalsosx.cpp -o globalsosx.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  globalsother.cpp -o 
globalsother.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  globalswin32.cpp -o 
globalswin32.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  gonnet.cpp -o gonnet.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  henikoffweight.cpp -o 
henikoffweight.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  henikoffweightpb.cpp -o 
henikoffweightpb.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  html.cpp -o html.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  hydro.cpp -o hydro.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  intmath.cpp -o intmath.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  local.cpp -o local.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  main.cpp -o main.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  makerootmsa.cpp -o makerootmsa.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  makerootmsab.cpp -o 
makerootmsab.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  maketree.cpp -o maketree.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  mhack.cpp -o mhack.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  mpam200.cpp -o mpam200.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  msa.cpp -o msa.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  msa2.cpp -o msa2.o
msa2.cpp:357:10: warning: enumeration value 'SEQWEIGHT_Undefined' not handled 
in switch [-Wswitch]
        switch (Method)
                ^
1 warning generated.
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  msadistkimura.cpp -o 
msadistkimura.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  msf.cpp -o msf.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  muscle.cpp -o muscle.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  muscleout.cpp -o muscleout.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  nucmx.cpp -o nucmx.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  nwdasimple.cpp -o nwdasimple.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  nwdasimple2.cpp -o nwdasimple2.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  nwdasmall.cpp -o nwdasmall.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  nwrec.cpp -o nwrec.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  nwsmall.cpp -o nwsmall.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  objscore.cpp -o objscore.o
objscore.cpp:31:10: warning: enumeration values 'OBJSCORE_Undefined' and 
'OBJSCORE_SPM' not handled in switch [-Wswitch]
        switch (OS)
                ^
1 warning generated.
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  objscore2.cpp -o objscore2.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  objscoreda.cpp -o objscoreda.o
objscore2.cpp:22:10: warning: enumeration value 'TERMGAPS_Undefined' not 
handled in switch [-Wswitch]
        switch (g_TermGaps)
                ^
1 warning generated.
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  onexception.cpp -o onexception.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  options.cpp -o options.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  outweights.cpp -o outweights.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  pam200mafft.cpp -o pam200mafft.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  params.cpp -o params.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  phy.cpp -o phy.o
params.cpp:441:10: warning: enumeration value 'PPSCORE_Undefined' not handled 
in switch [-Wswitch]
        switch (g_PPScore)
                ^
1 warning generated.
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  phy2.cpp -o phy2.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  phy3.cpp -o phy3.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  phy4.cpp -o phy4.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  phyfromclust.cpp -o 
phyfromclust.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  phyfromfile.cpp -o phyfromfile.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  physeq.cpp -o physeq.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  phytofile.cpp -o phytofile.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  posgap.cpp -o posgap.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  ppscore.cpp -o ppscore.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  profdb.cpp -o profdb.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  profile.cpp -o profile.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  profilefrommsa.cpp -o 
profilefrommsa.o
In file included from profdb.cpp:9:
In file included from ./clustsetmsa.h:8:
./msadist.h:22:10: warning: 10 enumeration values not handled in switch: 
'DISTANCE_Undefined', 'DISTANCE_Kmer6_6', 'DISTANCE_Kmer20_3'... [-Wswitch]
                switch(m_Distance)
                       ^
1 warning generated.
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  progalign.cpp -o progalign.o
profilefrommsa.cpp:230:10: warning: enumeration value 'ALPHA_Undefined' not 
handled in switch [-Wswitch]
        switch (g_Alpha)
                ^
1 warning generated.
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  progress.cpp -o progress.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  progressivealign.cpp -o 
progressivealign.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  pwpath.cpp -o pwpath.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  readmx.cpp -o readmx.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  realigndiffs.cpp -o 
realigndiffs.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  realigndiffse.cpp -o 
realigndiffse.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  refine.cpp -o refine.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  refinehoriz.cpp -o refinehoriz.o
In file included from refine.cpp:9:
In file included from ./clustsetmsa.h:8:
./msadist.h:22:10: warning: 10 enumeration values not handled in switch: 
'DISTANCE_Undefined', 'DISTANCE_Kmer6_6', 'DISTANCE_Kmer20_3'... [-Wswitch]
                switch(m_Distance)
                       ^
1 warning generated.
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  refinesubfams.cpp -o 
refinesubfams.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  refinetree.cpp -o refinetree.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  refinetreee.cpp -o refinetreee.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  refinevert.cpp -o refinevert.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  refinew.cpp -o refinew.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  savebest.cpp -o savebest.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  scoredist.cpp -o scoredist.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  scoregaps.cpp -o scoregaps.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  scorehistory.cpp -o 
scorehistory.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  scorepp.cpp -o scorepp.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  seq.cpp -o seq.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  seqvect.cpp -o seqvect.o
seqvect.cpp:201:17: warning: binding dereferenced null pointer to reference has 
undefined behavior [-Wnull-dereference]
        return (Seq &) *((Seq *) 0);
                       ^~~~~~~~~~~~
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  setblosumweights.cpp -o 
setblosumweights.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  setgscweights.cpp -o 
setgscweights.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  setnewhandler.cpp -o 
setnewhandler.o
1 warning generated.
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  spfast.cpp -o spfast.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  sptest.cpp -o sptest.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  stabilize.cpp -o stabilize.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  subfam.cpp -o subfam.o
c++ -c -O3 -funroll-loops -Winline -DNDEBUG=1  subfams.cpp -o subfams.o
subfams.cpp:4:13: error: functions that differ only in their return type cannot 
be overloaded
const float INFINITY = float(1e29);
      ~~~~~ ^
/usr/include/math.h:58:18: note: expanded from macro 'INFINITY'
#define INFINITY        __builtin_inff()
                        ^
subfams.cpp:4:13: note: previous implicit declaration is here
/usr/include/math.h:58:18: note: expanded from macro 'INFINITY'
#define INFINITY        __builtin_inff()
                        ^
1 error generated.
gmake[1]: *** [Makefile:32: subfams.o] Error 1
gmake[1]: *** Waiting for unfinished jobs....
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/muscle/work/muscle-3.8.1551'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/muscle
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