You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     y...@freebsd.org
Last committer: y...@freebsd.org
Ident:          $FreeBSD: head/science/gromacs/Makefile 522739 2020-01-12 
01:13:06Z yuri $
Log URL:        
http://beefy6.nyi.freebsd.org/data/120amd64-default/522982/logs/gromacs-2020.log
Build URL:      
http://beefy6.nyi.freebsd.org/build.html?mastername=120amd64-default&build=522982
Log:

=>> Building science/gromacs
build started at Tue Jan 14 17:05:30 UTC 2020
port directory: /usr/ports/science/gromacs
package name: gromacs-2020
building for: FreeBSD 120amd64-default-job-15 12.0-RELEASE-p12 FreeBSD 
12.0-RELEASE-p12 amd64
maintained by: y...@freebsd.org
Makefile ident:      $FreeBSD: head/science/gromacs/Makefile 522739 2020-01-12 
01:13:06Z yuri $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300062
Jail OSVERSION: 1200086
Job Id: 15

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1200086
UNAME_v=FreeBSD 12.0-RELEASE-p12
UNAME_r=12.0-RELEASE-p12
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/120amd64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/120amd64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=120amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/120amd64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for gromacs-2020:
     ATLAS=off: Use ATLAS for BLAS and LAPACK
     FLOAT=on: Use single instead of double precision
     OPENCL=off: Heterogeneous computing via OpenCL
     OPENMP=on: Parallel processing support via OpenMP
     SIMD=off: Use CPU-specific optimizations
     X11=on: X11 (graphics) support
====> Multiprocessing: you have to select exactly one of them
     NOMP=off: No multiprocessing support
     MPICH=off: Parallel processing support via MPICH
     OPENMPI=off: Parallel processing support via Open MPI
     THREAD_MPI=on: Build a thread-MPI-based multithreaded version of GROMACS
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
y...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" 
FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" ac_cv_path_PERL=/usr/local/bin/perl 
ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work  
HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8
--End CONFIGURE_ENV--

--MAKE_ENV--
F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" 
FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" PERL_USE_UNSAFE_INC=1 
XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work  
HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LANG=en_US.UTF-8 
LC_ALL=en_US.UTF-8 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 
-pipe  -fstack-
 protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" 
-Wl,-rpath=/usr/local/lib/gcc9  -L/usr/local/lib/gcc9 -B/usr/local/bin 
-L/usr/local/lib -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 
-pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
ATLAS="@comment " NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " SUFFIX_D="" 
MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " 
NO_OPENCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" 
SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " 
SUFFIX_MPI="" X11="" NO_X11="@comment " CMAKE_BUILD_TYPE="release" 
GTK2_VERSION="2.10.0"  GTK3_VERSION="3.0.0" OSREL=12.0 PREFIX=%D 
LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.30.1  
PERL_VER=5.30  PERL5_MAN1=lib/perl5/site_perl/man/man1  
PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.30 DOCSDIR="share/doc/gromacs"  
EXAMPLESDIR="share/examples/gromacs"  DATADIR="share/gromacs"  
WWWDIR="www/gromacs"  ETCDIR="etc/gromacs"
--End PLIST_SUB--

--SUB_LIST--
ATLAS="@comment " NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " MPICH="@comment " 
NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " NO_OPENCL="" 
OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" 
SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " X11="" 
NO_X11="@comment " PREFIX=/usr/local LOCALBASE=/usr/local  
DATADIR=/usr/local/share/gromacs DOCSDIR=/usr/local/share/doc/gromacs 
EXAMPLESDIR=/usr/local/share/examples/gromacs  WWWDIR=/usr/local/www/gromacs 
ETCDIR=/usr/local/etc/gromacs
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) 
(based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix 
InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 
335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: 
posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" 
"/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" 
"/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" 
"/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" 
"-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" 
"/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 
335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: 
posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=amd64
OPSYS=FreeBSD
_OSRELEASE=12.0-RELEASE-p12
OSREL=12.0
OSVERSION=1200086
PYTHONBASE=/usr/local
HAVE_COMPAT_IA32_KERN=YES
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   gromacs-2020 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.12.0.txz
[120amd64-default-job-15] Installing pkg-1.12.0...
[120amd64-default-job-15] Extracting pkg-1.12.0: .......... done
===>   gromacs-2020 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of gromacs-2020
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License LGPL21 accepted by the user
=> gromacs-2020.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch ftp://ftp.gromacs.org/pub/gromacs/gromacs-2020.tar.gz
gromacs-2020.tar.gz                                     27 MB    9 MBps    02s
===> Fetching all distfiles required by gromacs-2020 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-2020 for building
=> SHA256 Checksum OK for gromacs-2020.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-2020 for building
===>  Extracting for gromacs-2020
=> SHA256 Checksum OK for gromacs-2020.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for gromacs-2020
===>  Applying FreeBSD patches for gromacs-2020
===========================================================================
=======================<phase: build-depends  >============================
===>   gromacs-2020 depends on package: boost-libs>=1.44 - not found
===>   Installing existing package /packages/All/boost-libs-1.72.0.txz
[120amd64-default-job-15] Installing boost-libs-1.72.0...
<snip>
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/collective.cpp
[  4%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/profile.cpp
[  4%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/comm.cpp
[  4%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/reduce.cpp
[  4%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/event.cpp
[  4%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/reduce_fast.cpp
[  4%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/gather.cpp
[  5%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/scatter.cpp
[  5%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/group.cpp
[  5%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/tmpi_init.cpp
[  5%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/topology.cpp
[  5%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/list.cpp
[  5%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/type.cpp
[  5%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/scan.cpp
[  5%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/numa_malloc.cpp
[  5%] Building CXX object 
src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++  
-DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o 
CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/once.cpp
[  5%] Built target thread_mpi
/usr/bin/make -f 
src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make 
src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend
cd /wrkdirs/usr/ports/science/gromacs/work/.build && /usr/local/bin/cmake -E 
cmake_depends "Unix Makefiles" 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra 
/wrkdirs/usr/ports/science/gromacs/work/.build 
/wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra 
/wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake
Scanning dependencies of target linearalgebra
/usr/bin/make -f 
src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make 
src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build
[  5%] Building CXX object 
src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra && 
/usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra/eigensolver.cpp
[  5%] Building CXX object 
src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra && 
/usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra/gmx_arpack.cpp
[  5%] Building CXX object 
src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra && 
/usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra/matrix.cpp
[  5%] Building CXX object 
src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra && 
/usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra/nrjac.cpp
[  5%] Building CXX object 
src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra && 
/usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra/sparsematrix.cpp
[  5%] Built target linearalgebra
/usr/bin/make -f 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend
cd /wrkdirs/usr/ports/science/gromacs/work/.build && /usr/local/bin/cmake -E 
cmake_depends "Unix Makefiles" 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator
 /wrkdirs/usr/ports/science/gromacs/work/.build 
/wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
/wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake
Scanning dependencies of target modularsimulator
/usr/bin/make -f 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build
[  5%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/checkpointhelper.cpp
[  5%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/compositesimulatorelement.cpp
[  7%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/computeglobalselement.cpp
[  7%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/constraintelement.cpp
[  7%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/domdechelper.cpp
[  7%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/energyelement.cpp
[  7%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/forceelement.cpp
[  7%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp
[  7%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/modularsimulator.cpp
[  7%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp
[  7%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp
[  7%] Building CXX object 
src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator 
&& /usr/bin/c++  -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 
-I/wrkdirs/usr/ports/science/gromacs/work/.build/src 
-I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include
 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-fPIC   -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o 
CMakeFiles/modularsimulator.dir/propagator.cpp.o -c 
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:471:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::Single,
 gmx::ParrinelloRahmanVelocityScaling::Full>' requested here
                run<NumVelocityScalingValues::Single, 
ParrinelloRahmanVelocityScaling::Full>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:477:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::Single,
 gmx::ParrinelloRahmanVelocityScaling::No>' requested here
                run<NumVelocityScalingValues::Single, 
ParrinelloRahmanVelocityScaling::No>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:486:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::Multiple,
 gmx::ParrinelloRahmanVelocityScaling::Full>' requested here
                run<NumVelocityScalingValues::Multiple, 
ParrinelloRahmanVelocityScaling::Full>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:492:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::Multiple,
 gmx::ParrinelloRahmanVelocityScaling::No>' requested here
                run<NumVelocityScalingValues::Multiple, 
ParrinelloRahmanVelocityScaling::No>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:501:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::None,
 gmx::ParrinelloRahmanVelocityScaling::Full>' requested here
                run<NumVelocityScalingValues::None, 
ParrinelloRahmanVelocityScaling::Full>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:507:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::None,
 gmx::ParrinelloRahmanVelocityScaling::No>' requested here
                run<NumVelocityScalingValues::None, 
ParrinelloRahmanVelocityScaling::No>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:471:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::Single,
 gmx::ParrinelloRahmanVelocityScaling::Full>' requested here
                run<NumVelocityScalingValues::Single, 
ParrinelloRahmanVelocityScaling::Full>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:477:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::Single,
 gmx::ParrinelloRahmanVelocityScaling::No>' requested here
                run<NumVelocityScalingValues::Single, 
ParrinelloRahmanVelocityScaling::No>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:486:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::Multiple,
 gmx::ParrinelloRahmanVelocityScaling::Full>' requested here
                run<NumVelocityScalingValues::Multiple, 
ParrinelloRahmanVelocityScaling::Full>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:492:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::Multiple,
 gmx::ParrinelloRahmanVelocityScaling::No>' requested here
                run<NumVelocityScalingValues::Multiple, 
ParrinelloRahmanVelocityScaling::No>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:501:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::None,
 gmx::ParrinelloRahmanVelocityScaling::Full>' requested here
                run<NumVelocityScalingValues::None, 
ParrinelloRahmanVelocityScaling::Full>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, timestep_, lambda, invMassPerDim, v, f, 
diagPR, matrixPR);
                                              ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:507:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::None,
 gmx::ParrinelloRahmanVelocityScaling::No>' requested here
                run<NumVelocityScalingValues::None, 
ParrinelloRahmanVelocityScaling::No>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, 0.5 * timestep_, lambda, invMassPerDim, v, 
f, diagPR, matrixPR);
                                                    ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:471:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::Single,
 gmx::ParrinelloRahmanVelocityScaling::Full>' requested here
                run<NumVelocityScalingValues::Single, 
ParrinelloRahmanVelocityScaling::Full>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, 0.5 * timestep_, lambda, invMassPerDim, v, 
f, diagPR, matrixPR);
                                                    ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:477:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::Single,
 gmx::ParrinelloRahmanVelocityScaling::No>' requested here
                run<NumVelocityScalingValues::Single, 
ParrinelloRahmanVelocityScaling::No>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, 0.5 * timestep_, lambda, invMassPerDim, v, 
f, diagPR, matrixPR);
                                                    ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:486:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::Multiple,
 gmx::ParrinelloRahmanVelocityScaling::Full>' requested here
                run<NumVelocityScalingValues::Multiple, 
ParrinelloRahmanVelocityScaling::Full>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, 0.5 * timestep_, lambda, invMassPerDim, v, 
f, diagPR, matrixPR);
                                                    ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:492:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::Multiple,
 gmx::ParrinelloRahmanVelocityScaling::No>' requested here
                run<NumVelocityScalingValues::Multiple, 
ParrinelloRahmanVelocityScaling::No>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, 0.5 * timestep_, lambda, invMassPerDim, v, 
f, diagPR, matrixPR);
                                                    ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:501:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::None,
 gmx::ParrinelloRahmanVelocityScaling::Full>' requested here
                run<NumVelocityScalingValues::None, 
ParrinelloRahmanVelocityScaling::Full>();
                ^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53:
 error: variable 'lambda' must have explicitly specified data sharing attributes
                                a, 0.5 * timestep_, lambda, invMassPerDim, v, 
f, diagPR, matrixPR);
                                                    ^~~~~~
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:507:17:
 note: in instantiation of function template specialization 
'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::None,
 gmx::ParrinelloRahmanVelocityScaling::No>' requested here
                run<NumVelocityScalingValues::None, 
ParrinelloRahmanVelocityScaling::No>();
                ^
18 errors generated.
*** Error code 1

Stop.
make[3]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build
*** Error code 1

Stop.
make[2]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build
*** Error code 1

Stop.
make: stopped in /usr/ports/science/gromacs
_______________________________________________
freebsd-pkg-fallout@freebsd.org mailing list
https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout
To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"

Reply via email to