You are receiving this mail as a port that you maintain
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Please investigate the failure and submit a PR to fix
build.

Maintainer:     y...@freebsd.org
Last committer: ger...@freebsd.org
Ident:          $FreeBSD: head/science/py-MDAnalysis/Makefile 507372 2019-07-26 
20:46:53Z gerald $
Log URL:        
http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p535193_s361019/logs/py37-MDAnalysis-0.19.2_2.log
Build URL:      
http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p535193_s361019
Log:

=>> Building science/py-MDAnalysis
build started at Thu May 21 19:09:23 UTC 2020
port directory: /usr/ports/science/py-MDAnalysis
package name: py37-MDAnalysis-0.19.2_2
building for: FreeBSD head-powerpc64-default-job-01 13.0-CURRENT FreeBSD 
13.0-CURRENT 1300094 powerpc
maintained by: y...@freebsd.org
Makefile ident:      $FreeBSD: head/science/py-MDAnalysis/Makefile 507372 
2019-07-26 20:46:53Z gerald $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300084
Jail OSVERSION: 1300094
Job Id: 01




!!! Jail is newer than host. (Jail: 1300094, Host: 1300084) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py37-MDAnalysis-0.19.2_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.14.4.txz
[head-powerpc64-default-job-01] Installing pkg-1.14.4...
[head-powerpc64-default-job-01] Extracting pkg-1.14.4: .......... done
===>   py37-MDAnalysis-0.19.2_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py37-MDAnalysis-0.19.2_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by py37-MDAnalysis-0.19.2_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by py37-MDAnalysis-0.19.2_2 for building
=> SHA256 Checksum OK for MDAnalysis-0.19.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by py37-MDAnalysis-0.19.2_2 for building
===>  Extracting for py37-MDAnalysis-0.19.2_2
=> SHA256 Checksum OK for MDAnalysis-0.19.2.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py37-MDAnalysis-0.19.2_2
===>  Applying FreeBSD patches for py37-MDAnalysis-0.19.2_2
===> Cleanly applied FreeBSD patch(es)  patch-setup.py
===========================================================================
=======================<phase: build-depends  >============================
===>   py37-MDAnalysis-0.19.2_2 depends on package: py37-numpy>=1.16,1<1.19,1 - 
not found
===>   Installing existing package /packages/All/py37-numpy-1.16.5_5,1.txz
[head-powerpc64-default-job-01] Installing py37-numpy-1.16.5_5,1...
[head-powerpc64-default-job-01] `-- Installing gcc9-9.3.0_1...
[head-powerpc64-default-job-01] |   `-- Installing binutils-2.33.1_2,1...
[head-powerpc64-default-job-01] |   | `-- Installing gettext-runtime-0.20.2...
[head-powerpc64-default-job-01] |   |   `-- Installing indexinfo-0.3.1...
[head-powerpc64-default-job-01] |   |   `-- Extracting indexinfo-0.3.1: .... 
done
[head-powerpc64-default-job-01] |   | `-- Extracting gettext-runtime-0.20.2: 
.......... done
<snip>
2 warnings generated.
cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/src/transformations/transformations.o
 -L/usr/local/lib -lm -lpython3.7m -o 
build/lib.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/_transformations.so
building 'MDAnalysis.lib.formats.libmdaxdr' extension
creating build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC -D_LARGEFILE_SOURCE 
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-IMDAnalysis/lib/formats/include -IMDAnalysis/lib/formats 
-I/usr/local/include/python3.7m -c MDAnalysis/lib/formats/libmdaxdr.c -o 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/libmdaxdr.o 
-std=c99 -ffast-math -funroll-loops
In file included from MDAnalysis/lib/formats/libmdaxdr.c:618:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
 warning: "Using deprecated NumPy API, disable it with "          "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
In file included from MDAnalysis/lib/formats/libmdaxdr.c:621:
MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
In file included from MDAnalysis/lib/formats/libmdaxdr.c:622:
MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
In file included from MDAnalysis/lib/formats/libmdaxdr.c:623:
MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
4 warnings generated.
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC -D_LARGEFILE_SOURCE 
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-IMDAnalysis/lib/formats/include -IMDAnalysis/lib/formats 
-I/usr/local/include/python3.7m -c MDAnalysis/lib/formats/src/xdrfile.c -o 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/src/xdrfile.o
 -std=c99 -ffast-math -funroll-loops
In file included from MDAnalysis/lib/formats/src/xdrfile.c:62:
MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
MDAnalysis/lib/formats/src/xdrfile.c:501:17: warning: comparison of integers of 
different signs: 'int' and 'unsigned int' [-Wsign-compare]
    while (size >= num && num_of_bits < 32)
           ~~~~ ^  ~~~
MDAnalysis/lib/formats/src/xdrfile.c:547:32: warning: comparison of integers of 
different signs: 'unsigned int' and 'int' [-Wsign-compare]
    while (bytes[num_of_bytes] >= num)
           ~~~~~~~~~~~~~~~~~~~ ^  ~~~
MDAnalysis/lib/formats/src/xdrfile.c:656:21: warning: comparison of integers of 
different signs: 'int' and 'unsigned int' [-Wsign-compare]
    if (num_of_bits >= num_of_bytes * 8)
        ~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:658:17: warning: comparison of integers of 
different signs: 'int' and 'unsigned int' [-Wsign-compare]
                for (i = 0; i < num_of_bytes; i++)
                            ~ ^ ~~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:666:17: warning: comparison of integers of 
different signs: 'int' and 'unsigned int' [-Wsign-compare]
                for (i = 0; i < num_of_bytes-1; i++)
                            ~ ^ ~~~~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:706:16: warning: comparison of integers of 
different signs: 'unsigned int' and 'int' [-Wsign-compare]
                if (lastbits < num_of_bits)
                    ~~~~~~~~ ^ ~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:816:10: warning: comparison of integers of 
different signs: 'unsigned int' and 'int' [-Wsign-compare]
        if(size3>xfp->buf1size)
           ~~~~~^~~~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:868:19: warning: comparison of integers of 
different signs: 'unsigned long' and 'int' [-Wsign-compare]
        maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
                  ~~~~~~~^~~~
MDAnalysis/lib/formats/src/xdrfile.c:1012:10: warning: comparison of integers 
of different signs: 'unsigned int' and 'int' [-Wsign-compare]
        if(size3>xfp->buf1size)
           ~~~~~^~~~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:1107:52: warning: implicit conversion from 
'int' to 'float' changes value from 2147483645 to 2147483648 
[-Wimplicit-int-float-conversion]
        if ((float)maxint[0] - (float)minint[0] >= INT_MAX-2 ||
                                                ~~ ~~~~~~~^~
MDAnalysis/lib/formats/src/xdrfile.c:1108:49: warning: implicit conversion from 
'int' to 'float' changes value from 2147483645 to 2147483648 
[-Wimplicit-int-float-conversion]
                (float)maxint[1] - (float)minint[1] >= INT_MAX-2 ||
                                                    ~~ ~~~~~~~^~
MDAnalysis/lib/formats/src/xdrfile.c:1109:49: warning: implicit conversion from 
'int' to 'float' changes value from 2147483645 to 2147483648 
[-Wimplicit-int-float-conversion]
                (float)maxint[2] - (float)minint[2] >= INT_MAX-2) {
                                                    ~~ ~~~~~~~^~
MDAnalysis/lib/formats/src/xdrfile.c:1135:18: warning: comparison of integers 
of different signs: 'int' and 'unsigned long' [-Wsign-compare]
        while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
               ~~~~~~~~ ^ ~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:1141:19: warning: comparison of integers 
of different signs: 'unsigned long' and 'int' [-Wsign-compare]
        maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
                  ~~~~~~~^~~~
MDAnalysis/lib/formats/src/xdrfile.c:1273:8: warning: comparison of integers of 
different signs: 'int' and 'unsigned int' [-Wsign-compare]
        if(tmp==(unsigned int)buf2[0])
           ~~~^ ~~~~~~~~~~~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:1313:10: warning: comparison of integers 
of different signs: 'unsigned int' and 'int' [-Wsign-compare]
        if(size3>xfp->buf1size)
           ~~~~~^~~~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:1368:19: warning: comparison of integers 
of different signs: 'unsigned long' and 'int' [-Wsign-compare]
        maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
                  ~~~~~~~^~~~
MDAnalysis/lib/formats/src/xdrfile.c:1504:10: warning: comparison of integers 
of different signs: 'unsigned int' and 'int' [-Wsign-compare]
        if(size3>xfp->buf1size) {
           ~~~~~^~~~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:1594:52: warning: implicit conversion from 
'int' to 'float' changes value from 2147483645 to 2147483648 
[-Wimplicit-int-float-conversion]
        if ((float)maxint[0] - (float)minint[0] >= INT_MAX-2 ||
                                                ~~ ~~~~~~~^~
MDAnalysis/lib/formats/src/xdrfile.c:1595:49: warning: implicit conversion from 
'int' to 'float' changes value from 2147483645 to 2147483648 
[-Wimplicit-int-float-conversion]
                (float)maxint[1] - (float)minint[1] >= INT_MAX-2 ||
                                                    ~~ ~~~~~~~^~
MDAnalysis/lib/formats/src/xdrfile.c:1596:49: warning: implicit conversion from 
'int' to 'float' changes value from 2147483645 to 2147483648 
[-Wimplicit-int-float-conversion]
                (float)maxint[2] - (float)minint[2] >= INT_MAX-2) {
                                                    ~~ ~~~~~~~^~
MDAnalysis/lib/formats/src/xdrfile.c:1619:18: warning: comparison of integers 
of different signs: 'int' and 'unsigned long' [-Wsign-compare]
        while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
               ~~~~~~~~ ^ ~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:1624:19: warning: comparison of integers 
of different signs: 'unsigned long' and 'int' [-Wsign-compare]
        maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
                  ~~~~~~~^~~~
MDAnalysis/lib/formats/src/xdrfile.c:1734:8: warning: comparison of integers of 
different signs: 'int' and 'unsigned int' [-Wsign-compare]
        if(tmp==(unsigned int)buf2[0])
           ~~~^ ~~~~~~~~~~~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:2535:3: warning: incompatible pointer 
types initializing 'unsigned int (*)(XDR *)' (aka 'unsigned int (*)(struct XDR 
*)') with an expression of type 'int64_t (XDR *)' (aka 'long (struct XDR *)') 
[-Wincompatible-pointer-types]
                xdrstdio_getpos,                /* get offset in the stream */
                ^~~~~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile.c:2536:3: warning: incompatible pointer 
types initializing 'int (*)(XDR *, unsigned int)' (aka 'int (*)(struct XDR *, 
unsigned int)') with an expression of type 'int (XDR *, int64_t, int)' (aka 
'int (struct XDR *, long, int)') [-Wincompatible-pointer-types]
                xdrstdio_setpos,                /* set offset in the stream */
                ^~~~~~~~~~~~~~~
27 warnings generated.
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC -D_LARGEFILE_SOURCE 
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-IMDAnalysis/lib/formats/include -IMDAnalysis/lib/formats 
-I/usr/local/include/python3.7m -c MDAnalysis/lib/formats/src/xdrfile_xtc.c -o 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/src/xdrfile_xtc.o
 -std=c99 -ffast-math -funroll-loops
In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:30:
MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31:
MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
2 warnings generated.
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC -D_LARGEFILE_SOURCE 
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-IMDAnalysis/lib/formats/include -IMDAnalysis/lib/formats 
-I/usr/local/include/python3.7m -c MDAnalysis/lib/formats/src/xdrfile_trr.c -o 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/src/xdrfile_trr.o
 -std=c99 -ffast-math -funroll-loops
In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:38:
MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:39:
MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
MDAnalysis/lib/formats/src/xdrfile_trr.c:78:14: warning: comparison of integers 
of different signs: 'int' and 'unsigned long' [-Wsign-compare]
    if (slen != strlen(version) + 1)
        ~~~~ ^  ~~~~~~~~~~~~~~~~~~~
MDAnalysis/lib/formats/src/xdrfile_trr.c:86:43: warning: comparison of integers 
of different signs: 'int' and 'unsigned long' [-Wsign-compare]
    if (xdrfile_write_string(version, xd) != (strlen(version) + 1))
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^   ~~~~~~~~~~~~~~~~~~~
4 warnings generated.
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC -D_LARGEFILE_SOURCE 
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-IMDAnalysis/lib/formats/include -IMDAnalysis/lib/formats 
-I/usr/local/include/python3.7m -c MDAnalysis/lib/formats/src/trr_seek.c -o 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/src/trr_seek.o
 -std=c99 -ffast-math -funroll-loops
In file included from MDAnalysis/lib/formats/src/trr_seek.c:30:
MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
In file included from MDAnalysis/lib/formats/src/trr_seek.c:31:
MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
2 warnings generated.
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC -D_LARGEFILE_SOURCE 
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-IMDAnalysis/lib/formats/include -IMDAnalysis/lib/formats 
-I/usr/local/include/python3.7m -c MDAnalysis/lib/formats/src/xtc_seek.c -o 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/src/xtc_seek.o
 -std=c99 -ffast-math -funroll-loops
In file included from MDAnalysis/lib/formats/src/xtc_seek.c:25:
MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
In file included from MDAnalysis/lib/formats/src/xtc_seek.c:26:
MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: '/*' within block 
comment [-Wcomment]
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
 ^
2 warnings generated.
cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/libmdaxdr.o 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/src/xdrfile.o
 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/src/xdrfile_xtc.o
 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/src/xdrfile_trr.o
 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/src/trr_seek.o
 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/src/xtc_seek.o
 -L/usr/local/lib -lpython3.7m -o 
build/lib.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/libmdaxdr.so
building 'MDAnalysis.lib.formats.cython_util' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-I/usr/local/include/python3.7m -c MDAnalysis/lib/formats/cython_util.c -o 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/cython_util.o
 -std=c99 -ffast-math -funroll-loops
In file included from MDAnalysis/lib/formats/cython_util.c:592:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
 warning: "Using deprecated NumPy API, disable it with "          "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/cython_util.o
 -L/usr/local/lib -lpython3.7m -o 
build/lib.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/lib/formats/cython_util.so
building 'MDAnalysis.analysis.encore.cutils' extension
creating build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/analysis
creating build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/analysis/encore
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-I/usr/local/include/python3.7m -c MDAnalysis/analysis/encore/cutils.c -o 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/analysis/encore/cutils.o 
-std=c99 -ffast-math -funroll-loops
In file included from MDAnalysis/analysis/encore/cutils.c:592:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
 warning: "Using deprecated NumPy API, disable it with "          "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/analysis/encore/cutils.o 
-L/usr/local/lib -lpython3.7m -o 
build/lib.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/analysis/encore/cutils.so
building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension
creating 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/analysis/encore/clustering
creating 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/analysis/encore/clustering/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-IMDAnalysis/analysis/encore/clustering/include -I/usr/local/include/python3.7m 
-c MDAnalysis/analysis/encore/clustering/affinityprop.c -o 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/analysis/encore/clustering/affinityprop.o
 -std=c99 -ffast-math -funroll-loops
In file included from MDAnalysis/analysis/encore/clustering/affinityprop.c:598:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
 warning: "Using deprecated NumPy API, disable it with "          "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-IMDAnalysis/analysis/encore/clustering/include -I/usr/local/include/python3.7m 
-c MDAnalysis/analysis/encore/clustering/src/ap.c -o 
build/temp.freebsd-13.0-CURRENT-powerpc-3.7/MDAnalysis/analysis/encore/clustering/src/ap.o
 -std=c99 -ffast-math -funroll-loops
setup.py:118: DeprecationWarning: The SafeConfigParser class has been renamed 
to ConfigParser in Python 3.2. This alias will be removed in future versions. 
Use ConfigParser directly instead.
  self.config = configparser.SafeConfigParser()
error: command 'cc' terminated by signal 4
*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-MDAnalysis
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