You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     y...@freebsd.org
Last committer: zeis...@freebsd.org
Ident:          $FreeBSD: branches/2020Q2/biology/ncbi-cxx-toolkit/Makefile 
516742 2019-11-04 21:08:20Z zeising $
Log URL:        
http://beefy4.nyi.freebsd.org/data/121i386-quarterly/536257/logs/ncbi-cxx-toolkit-21.0.0_2.log
Build URL:      
http://beefy4.nyi.freebsd.org/build.html?mastername=121i386-quarterly&build=536257
Log:

=>> Building biology/ncbi-cxx-toolkit
build started at Sat May 23 01:21:10 UTC 2020
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-21.0.0_2
building for: FreeBSD 121i386-quarterly-job-11 12.1-RELEASE-p5 FreeBSD 
12.1-RELEASE-p5 i386
maintained by: y...@freebsd.org
Makefile ident:      $FreeBSD: 
branches/2020Q2/biology/ncbi-cxx-toolkit/Makefile 516742 2019-11-04 21:08:20Z 
zeising $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300089
Jail OSVERSION: 1201000
Job Id: 11

---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1201000
UNAME_v=FreeBSD 12.1-RELEASE-p5
UNAME_r=12.1-RELEASE-p5
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/121i386-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/121i386-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=121i386-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/121i386-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
y...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--without-debug --with-dll --without-static --x-libraries=/usr/local/lib 
--x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl 
ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 
PYTHON="/usr/local/bin/python3.7" 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work  
HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl 
OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work  
HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  
-fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  
LDFLAGS="  -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.7m  PYTHON_LIBDIR=lib/python3.7  
PYTHON_PLATFORM=freebsd12  PYTHON_SITELIBDIR=lib/python3.7/site-packages  
PYTHON_SUFFIX=37  PYTHON_VER=3.7  PYTHON_VERSION=python3.7 PYTHON2="@comment " 
PYTHON3="" OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local 
LIB32DIR=lib PERL_VERSION=5.30.2  PERL_VER=5.30  
PERL5_MAN1=lib/perl5/site_perl/man/man1  
PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.30 DOCSDIR="share/doc/ncbi-cxx-toolkit"  
EXAMPLESDIR="share/examples/ncbi-cxx-toolkit"  DATADIR="share/ncbi-cxx-toolkit" 
 WWWDIR="www/ncbi-cxx-toolkit"  ETCDIR="etc/ncbi-cxx-toolkit"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  
DATADIR=/usr/local/share/ncbi-cxx-toolkit 
DOCSDIR=/usr/local/share/doc/ncbi-cxx-toolkit 
EXAMPLESDIR=/usr/local/share/examples/ncbi-cxx-toolkit  
WWWDIR=/usr/local/www/ncbi-cxx-toolkit ETCDIR=/usr/local/etc/ncbi-cxx-toolkit
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) 
(based on LLVM 8.0.1) Target: i386-unknown-freebsd12.1 Thread model: posix 
InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 
366581) (based on LLVM 8.0.1) Target: i386-unknown-freebsd12.1 Thread model: 
posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" 
"/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" 
"elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" 
"/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" 
"--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" 
"--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 
366581) (based on LLVM 8.0.1) Target: i386-unknown-freebsd12.1 Thread model: 
posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=12.1-RELEASE-p5
OSREL=12.1
OSVERSION=1201000
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/sbin/pkg - not 
found
===>   Installing existing package /packages/All/pkg-1.13.2.txz
[121i386-quarterly-job-11] Installing pkg-1.13.2...
[121i386-quarterly-job-11] Extracting pkg-1.13.2: .......... done
===>   ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ncbi-cxx-toolkit-21.0.0_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
=> SHA256 Checksum OK for ncbi_cxx--21_0_0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
===>  Extracting for ncbi-cxx-toolkit-21.0.0_2
=> SHA256 Checksum OK for ncbi_cxx--21_0_0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for ncbi-cxx-toolkit-21.0.0_2
===>  Applying FreeBSD patches for ncbi-cxx-toolkit-21.0.0_2
===========================================================================
=======================<phase: build-depends  >============================
===>   ncbi-cxx-toolkit-21.0.0_2 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_3.txz
[121i386-quarterly-job-11] Installing gmake-4.2.1_3...
[121i386-quarterly-job-11] `-- Installing gettext-runtime-0.20.1...
[121i386-quarterly-job-11] |   `-- Installing indexinfo-0.3.1...
[121i386-quarterly-job-11] |   `-- Extracting indexinfo-0.3.1: .... done
[121i386-quarterly-job-11] `-- Extracting gettext-runtime-0.20.1: .......... 
done
[121i386-quarterly-job-11] Extracting gmake-4.2.1_3: .......... done
===>   ncbi-cxx-toolkit-21.0.0_2 depends on executable: gmake - found
===>   Returning to build of ncbi-cxx-toolkit-21.0.0_2
===>   ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/bin/python3.7 - 
not found
===>   Installing existing package /packages/All/python37-3.7.7.txz
[121i386-quarterly-job-11] Installing python37-3.7.7...
[121i386-quarterly-job-11] `-- Installing libffi-3.2.1_3...
[121i386-quarterly-job-11] `-- Extracting libffi-3.2.1_3: .......... done
<snip>
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/proteinkmer'
/usr/local/bin/gmake -C format -w  all_r  ||  exit 5
gmake[5]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/format'
/usr/local/bin/gmake -f 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/Makefile.lib.tmpl
 
srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format
 TMPL=xblastformat -w export-headers
gmake[6]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/format'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/format'
/usr/local/bin/gmake -f 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/Makefile.lib.tmpl
 
srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format
 TMPL=xblastformat -w all
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blastxml_format.cpp:501:51:
 warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations]
                auto_ptr<CObjectOStreamXml> xml_one_hit_os (new 
CObjectOStreamXml (one_hit_os,false));
                                                                ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/serial/objostrxml.hpp:66:5:
 note: 'CObjectOStreamXml' has been explicitly marked deprecated here
    NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut));
    ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/corelib/ncbimisc.hpp:1118:43:
 note: expanded from macro 'NCBI_DEPRECATED_CTOR'
#  define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
                                          ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc/ncbiconf_unix.h:832:40:
 note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
                                       ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blastxml_format.cpp:785:50:
 warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations]
        auto_ptr<CObjectOStreamXml> xml_one_iter_os(new CObjectOStreamXml 
(one_iter_ss_os,false));
                                                        ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/serial/objostrxml.hpp:66:5:
 note: 'CObjectOStreamXml' has been explicitly marked deprecated here
    NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut));
    ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/corelib/ncbimisc.hpp:1118:43:
 note: expanded from macro 'NCBI_DEPRECATED_CTOR'
#  define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
                                          ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc/ncbiconf_unix.h:832:40:
 note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
                                       ^
2 warnings generated.
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blast_format.cpp:49:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/algo/blast/format/data4xmlformat.hpp:155:23:
 warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations]
            m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */
                      ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/algo/blast/api/blast_options.hpp:171:5:
 note: 'GetFilterString' has been explicitly marked deprecated here
    NCBI_DEPRECATED char* GetFilterString() const;
    ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc/ncbiconf_unix.h:832:40:
 note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
                                       ^
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blast_format.cpp:51:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/algo/blast/format/data4xml2format.hpp:140:24:
 warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations]
            m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */
                       ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/algo/blast/api/blast_options.hpp:171:5:
 note: 'GetFilterString' has been explicitly marked deprecated here
    NCBI_DEPRECATED char* GetFilterString() const;
    ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc/ncbiconf_unix.h:832:40:
 note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
                                       ^
2 warnings generated.
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/data4xmlformat.cpp:37:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/algo/blast/format/data4xmlformat.hpp:155:23:
 warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations]
            m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */
                      ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/algo/blast/api/blast_options.hpp:171:5:
 note: 'GetFilterString' has been explicitly marked deprecated here
    NCBI_DEPRECATED char* GetFilterString() const;
    ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc/ncbiconf_unix.h:832:40:
 note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
                                       ^
1 warning generated.
In file included from 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/data4xml2format.cpp:36:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/algo/blast/format/data4xml2format.hpp:140:24:
 warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations]
            m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */
                       ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/algo/blast/api/blast_options.hpp:171:5:
 note: 'GetFilterString' has been explicitly marked deprecated here
    NCBI_DEPRECATED char* GetFilterString() const;
    ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc/ncbiconf_unix.h:832:40:
 note: expanded from macro 'NCBI_DEPRECATED'
#define NCBI_DEPRECATED __attribute__((__deprecated__))
                                       ^
1 warning generated.
gmake[6]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/format'
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blast_async_format.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/sam.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/vecscreen_run.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/build_archive.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/data4xml2format.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/data4xmlformat.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blast_format.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blastxml2_format.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blastxml_format.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blastfmtutil.cpp.
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLASTFORMAT -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blastfmtutil.cpp
 -o blastfmtutil.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLASTFORMAT -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blastxml_format.cpp
 -o blastxml_format.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLASTFORMAT -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blastxml2_format.cpp
 -o blastxml2_format.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLASTFORMAT -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blast_format.cpp
 -o blast_format.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLASTFORMAT -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/data4xmlformat.cpp
 -o data4xmlformat.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLASTFORMAT -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/data4xml2format.cpp
 -o data4xml2format.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLASTFORMAT -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/build_archive.cpp
 -o build_archive.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLASTFORMAT -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/vecscreen_run.cpp
 -o vecscreen_run.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLASTFORMAT -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/sam.cpp
 -o sam.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLASTFORMAT -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/format/blast_async_format.cpp
 -o blast_async_format.o 
/bin/rm -f libxblastformat.so .libxblastformat.so.stamp
/usr/bin/c++  -stdlib=libc++ -std=gnu++11  -shared -o libxblastformat.so 
-Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread 
-fstack-protector-strong -O -fPIC blastfmtutil.o blastxml_format.o 
blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o 
build_archive.o vecscreen_run.o sam.o blast_async_format.o 
-Wl,-rpath-link,/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib
 
-L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib
 -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment 
-lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr 
-lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli 
-lxnetblast -lblastdb -lscoremat -ltables -llmdb -lalign_format -lblastxml 
-lblastxml2 -lxhtml -lxcgi -pthread -lm -pthread 
/bin/sh 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/scripts/common/impl/if_diff.sh
 /bin/ln -f libxblastformat.so 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib
/bin/ln -f libxblastformat.so 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib/libxblastformat.so
/bin/ln -f .xblastformat.dep 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/status/.xblastformat.dep
gmake[6]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/format'
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/format'
/usr/local/bin/gmake -C blastinput -w  all_r  ||  exit 5
gmake[5]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput'
/usr/local/bin/gmake -f 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/Makefile.lib.tmpl
 
srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput
 TMPL=blastinput -w export-headers
gmake[6]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput'
/usr/local/bin/gmake -f 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/Makefile.lib.tmpl
 
srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput
 TMPL=blastinput -w all
gmake[6]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput'
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_asn1_input.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/kblastp_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/magicblast_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/deltablast_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/igblastp_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/igblastn_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/rpstblastn_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/rpsblast_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/psiblast_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/tblastx_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/tblastn_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blastx_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/rmblastn_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blastn_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blastp_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_input_aux.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/cmdline_flags.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_args.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_scope_src.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_fasta_input.cpp.
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_input.cpp.
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_input.cpp
 -o blast_input.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_fasta_input.cpp
 -o blast_fasta_input.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_scope_src.cpp
 -o blast_scope_src.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_args.cpp
 -o blast_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/cmdline_flags.cpp
 -o cmdline_flags.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_input_aux.cpp
 -o blast_input_aux.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blastp_args.cpp
 -o blastp_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blastn_args.cpp
 -o blastn_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/rmblastn_args.cpp
 -o rmblastn_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blastx_args.cpp
 -o blastx_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/tblastn_args.cpp
 -o tblastn_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/tblastx_args.cpp
 -o tblastx_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/psiblast_args.cpp
 -o psiblast_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/rpsblast_args.cpp
 -o rpsblast_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/rpstblastn_args.cpp
 -o rpstblastn_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/igblastn_args.cpp
 -o igblastn_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/igblastp_args.cpp
 -o igblastp_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/deltablast_args.cpp
 -o deltablast_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/magicblast_args.cpp
 -o magicblast_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/kblastp_args.cpp
 -o kblastp_args.o 
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG 
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/blast_asn1_input.cpp
 -o blast_asn1_input.o 
/bin/rm -f libblastinput.so .libblastinput.so.stamp
/usr/bin/c++  -stdlib=libc++ -std=gnu++11  -shared -o libblastinput.so 
-Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread 
-fstack-protector-strong -O -fPIC blast_input.o blast_fasta_input.o 
blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o 
blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o 
psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o 
igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o 
blast_asn1_input.o 
-Wl,-rpath-link,/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib
 
-L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib
 -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb 
-lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lncbi_xloader_genbank 
-lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver 
-lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_c
 ollection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil 
-lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lxutil -pthread 
-lm -pthread 
/bin/sh 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/scripts/common/impl/if_diff.sh
 /bin/ln -f libblastinput.so 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib
/bin/ln -f libblastinput.so 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib/libblastinput.so
/bin/ln -f .blastinput.dep 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/status/.blastinput.dep
gmake[6]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput'
/usr/local/bin/gmake -C unit_test -w  all_r  ||  exit 5
gmake[6]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/unit_test'
NOTE: Skipping project unit_test due to unmet requirements:
Boost.Test.Included
gmake[7]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/unit_test'
gmake[7]: Nothing to be done for 'mark-as-disabled_r'.
gmake[7]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/unit_test'
gmake[6]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/unit_test'
/usr/local/bin/gmake -C demo -w  all_r  ||  exit 5
gmake[6]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
/usr/local/bin/gmake -f 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/Makefile.app.tmpl
 
srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo
 TMPL=blastinput_demo -w all
ld: error: 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib/libvalid.so:
 undefined reference to ncbi::CRegexp::CRegexp(ncbi::CTempStringEx, unsigned 
int)
ld: error: 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib/libvalid.so:
 undefined reference to ncbi::CRegexp::~CRegexp()
c++: error: linker command failed with exit code 1 (use -v to see invocation)
gmake[7]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/Makefile.app:156:
 blastinput_demo] Error 1
gmake[7]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
Updating dependency information for 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp.
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   
-Wno-deprecated-register -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE 
-D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc
 -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/util/lmdb
 
-I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/util/lmdb
 
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp
 -o blastinput_demo.o 
/usr/bin/c++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/local/lib 
-Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O 
blastinput_demo.o 
-Wl,-rpath-link,/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib
 
-L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib
 -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat 
-lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup 
-lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml 
-lblastxml2 -lxcgi -lxhtml -lentrez2cli -lentrez2 -lproteinkmer -lxblast 
-lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask 
-lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread 
-lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat 
-ltables -llmdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 
-lncbi_xreader_cache -ldbapi
 _driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection 
-lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub 
-lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -pthread -lz 
-lz -lbz2 -lm -pthread -o blastinput_demo
gmake[7]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
FAILED: src/algo/blast/blastinput/demo/Makefile.blastinput_demo.app
gmake[7]: Entering directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
/bin/rm -f blastinput_demo .blastinput_demo.stamp
gmake[7]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
gmake[6]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_l:304:
 all.nonusr] Error 2
gmake[6]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
gmake[5]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41:
 all_r.real] Error 5
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput'
gmake[4]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41:
 all_r.real] Error 5
gmake[4]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast'
gmake[3]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41:
 all_r.real] Error 5
gmake[3]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo'
gmake[2]: *** 
[/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41:
 all_r.real] Error 5
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ncbi-cxx-toolkit
_______________________________________________
freebsd-pkg-fallout@freebsd.org mailing list
https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout
To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"

Reply via email to