You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     y...@freebsd.org
Last committer: y...@freebsd.org
Ident:          $FreeBSD: branches/2020Q3/biology/py-scikit-bio/Makefile 535346 
2020-05-16 02:29:20Z yuri $
Log URL:        
http://beefy4.nyi.freebsd.org/data/121i386-quarterly/541156/logs/py37-scikit-bio-0.5.6.log
Build URL:      
http://beefy4.nyi.freebsd.org/build.html?mastername=121i386-quarterly&build=541156
Log:

=>> Building biology/py-scikit-bio
build started at Sun Jul  5 13:58:11 UTC 2020
port directory: /usr/ports/biology/py-scikit-bio
package name: py37-scikit-bio-0.5.6
building for: FreeBSD 121i386-quarterly-job-13 12.1-RELEASE-p6 FreeBSD 
12.1-RELEASE-p6 i386
maintained by: y...@freebsd.org
Makefile ident:      $FreeBSD: branches/2020Q3/biology/py-scikit-bio/Makefile 
535346 2020-05-16 02:29:20Z yuri $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300094
Jail OSVERSION: 1201000
Job Id: 13

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--MAINTAINER--
y...@freebsd.org
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--CONFIGURE_ARGS--

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--CONFIGURE_ENV--
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--End PLIST_SUB--

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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py37-scikit-bio-0.5.6 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.14.6.txz
[121i386-quarterly-job-13] Installing pkg-1.14.6...
[121i386-quarterly-job-13] Extracting pkg-1.14.6: .......... done
===>   py37-scikit-bio-0.5.6 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py37-scikit-bio-0.5.6
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
=> scikit-bio-0.5.6.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch 
https://files.pythonhosted.org/packages/source/s/scikit-bio/scikit-bio-0.5.6.tar.gz
scikit-bio-0.5.6.tar.gz                               8184 kB   46 MBps    00s
===> Fetching all distfiles required by py37-scikit-bio-0.5.6 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py37-scikit-bio-0.5.6 for building
=> SHA256 Checksum OK for scikit-bio-0.5.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py37-scikit-bio-0.5.6 for building
===>  Extracting for py37-scikit-bio-0.5.6
=> SHA256 Checksum OK for scikit-bio-0.5.6.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py37-scikit-bio-0.5.6
===========================================================================
=======================<phase: build-depends  >============================
===>   py37-scikit-bio-0.5.6 depends on package: py37-numpy>=1.16,1<1.19,1 - 
not found
===>   Installing existing package /packages/All/py37-numpy-1.16.6,1.txz
[121i386-quarterly-job-13] Installing py37-numpy-1.16.6,1...
[121i386-quarterly-job-13] `-- Installing gcc9-9.3.0_1...
[121i386-quarterly-job-13] |   `-- Installing binutils-2.33.1_2,1...
[121i386-quarterly-job-13] |   | `-- Installing gettext-runtime-0.20.2...
[121i386-quarterly-job-13] |   |   `-- Installing indexinfo-0.3.1...
[121i386-quarterly-job-13] |   |   `-- Extracting indexinfo-0.3.1: .... done
[121i386-quarterly-job-13] |   | `-- Extracting gettext-runtime-0.20.2: 
.......... done
[121i386-quarterly-job-13] |   `-- Extracting binutils-2.33.1_2,1: .......... 
done
[121i386-quarterly-job-13] |   `-- Installing gmp-6.2.0...
[121i386-quarterly-job-13] |   `-- Extracting gmp-6.2.0: .......... done
[121i386-quarterly-job-13] |   `-- Installing mpc-1.1.0_2...
<snip>
copying skbio/io/format/tests/data/qual_blanks_end_of_file -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_example3_scores -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_multi_seq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/tsv_8_fields -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_multiple_trees -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_seq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_missing_header -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_custom_multi_line -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_single_seq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/gff3_multi_record -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying 
skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qseq_invalid_lane -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_custom_minimal -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_nonstring_labels -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_metadata_only -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_2_seqs_defaults -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_ws_lines_between_records -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying 
skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_max_width_5 -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_max_width_1 -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_tabs.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_data_only -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_invalid_no_data -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_default_single_line -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_blank_lines -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_multi_seq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_single_seq_short -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_different_padding -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_rna -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_runon_references -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_single_seq_long -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_single_record -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_long_qual.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_custom_minimal -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_all_data_types -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_qual_null.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying 
skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence 
-> build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying 
skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_qual_escape.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_extensive -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_single_record_simple -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/empty -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_default_single_line -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_missing_reference_items -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/io/format/tests/data
running build_ext
building 'skbio.metadata._intersection' extension
creating build/temp.freebsd-12.1-RELEASE-p6-i386-3.7
creating build/temp.freebsd-12.1-RELEASE-p6-i386-3.7/skbio
creating build/temp.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/metadata
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-I/usr/local/include/python3.7m -c skbio/metadata/_intersection.c -o 
build/temp.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/metadata/_intersection.o
skbio/metadata/_intersection.c:2297:5: warning: code will never be executed 
[-Wunreachable-code]
    PyErr_SetString(PyExc_ZeroDivisionError, "float division");
    ^~~~~~~~~~~~~~~
1 warning generated.
cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing 
build/temp.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/metadata/_intersection.o 
-L/usr/local/lib -lpython3.7m -o 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/metadata/_intersection.so
building 'skbio.stats.__subsample' extension
creating build/temp.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/stats
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-I/usr/local/include/python3.7m -c skbio/stats/__subsample.c -o 
build/temp.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/stats/__subsample.o
In file included from skbio/stats/__subsample.c:617:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
 warning: "Using deprecated NumPy API, disable it with "          "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong 
-fno-strict-aliasing 
build/temp.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/stats/__subsample.o 
-L/usr/local/lib -lpython3.7m -o 
build/lib.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/stats/__subsample.so
building 'skbio.alignment._ssw_wrapper' extension
creating build/temp.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/alignment
creating build/temp.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/alignment/_lib
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-I/usr/local/include/python3.7m -c skbio/alignment/_ssw_wrapper.c -o 
build/temp.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/alignment/_ssw_wrapper.o 
-Wno-error=declaration-after-statement
In file included from skbio/alignment/_ssw_wrapper.c:624:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from 
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
 warning: "Using deprecated NumPy API, disable it with "          "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -fPIC 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-I/usr/local/lib/python3.7/site-packages/numpy/core/include 
-I/usr/local/include/python3.7m -c skbio/alignment/_lib/ssw.c -o 
build/temp.freebsd-12.1-RELEASE-p6-i386-3.7/skbio/alignment/_lib/ssw.o 
-Wno-error=declaration-after-statement
skbio/alignment/_lib/ssw.c:155:21: error: always_inline function 
'_mm_set1_epi32' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
    __m128i vZero = _mm_set1_epi32(0);
                    ^
skbio/alignment/_lib/ssw.c:164:21: error: always_inline function 
'_mm_set1_epi8' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
    __m128i vGapO = _mm_set1_epi8(weight_gapO);
                    ^
skbio/alignment/_lib/ssw.c:167:21: error: always_inline function 
'_mm_set1_epi8' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
    __m128i vGapE = _mm_set1_epi8(weight_gapE); 
                    ^
skbio/alignment/_lib/ssw.c:170:21: error: always_inline function 
'_mm_set1_epi8' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
    __m128i vBias = _mm_set1_epi8(bias);    
                    ^
skbio/alignment/_lib/ssw.c:195:14: error: '__builtin_ia32_pslldqi128_byteshift' 
needs target feature sse2
        vH = _mm_slli_si128 (vH, 1); /* Shift the 128-bit value in vH left by 1 
byte. */
             ^
/usr/lib/clang/8.0.1/include/emmintrin.h:2840:12: note: expanded from macro 
'_mm_slli_si128'
  (__m128i)__builtin_ia32_pslldqi128_byteshift((__v2di)(__m128i)(a), (int)(imm))
           ^
skbio/alignment/_lib/ssw.c:205:18: error: always_inline function 
'_mm_adds_epu8' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
            vH = _mm_adds_epu8(vH, _mm_load_si128(vP + j));
                 ^
skbio/alignment/_lib/ssw.c:205:36: error: always_inline function 
'_mm_load_si128' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
            vH = _mm_adds_epu8(vH, _mm_load_si128(vP + j));
                                   ^
skbio/alignment/_lib/ssw.c:206:18: error: always_inline function 
'_mm_subs_epu8' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
            vH = _mm_subs_epu8(vH, vBias); /* vH will be always > 0 */
                 ^
skbio/alignment/_lib/ssw.c:214:17: error: always_inline function 
'_mm_load_si128' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
            e = _mm_load_si128(pvE + j);
                ^
skbio/alignment/_lib/ssw.c:215:18: error: always_inline function '_mm_max_epu8' 
requires target feature 'sse2', but would be inlined into function 
'sw_sse2_byte' that is compiled without support for 'sse2'
            vH = _mm_max_epu8(vH, e);
                 ^
skbio/alignment/_lib/ssw.c:216:18: error: always_inline function '_mm_max_epu8' 
requires target feature 'sse2', but would be inlined into function 
'sw_sse2_byte' that is compiled without support for 'sse2'
            vH = _mm_max_epu8(vH, vF);
                 ^
skbio/alignment/_lib/ssw.c:217:26: error: always_inline function '_mm_max_epu8' 
requires target feature 'sse2', but would be inlined into function 
'sw_sse2_byte' that is compiled without support for 'sse2'
            vMaxColumn = _mm_max_epu8(vMaxColumn, vH);
                         ^
skbio/alignment/_lib/ssw.c:224:13: error: always_inline function 
'_mm_store_si128' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
            _mm_store_si128(pvHStore + j, vH);
            ^
skbio/alignment/_lib/ssw.c:227:18: error: always_inline function 
'_mm_subs_epu8' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
            vH = _mm_subs_epu8(vH, vGapO); /* saturation arithmetic, result >= 
0 */
                 ^
skbio/alignment/_lib/ssw.c:228:17: error: always_inline function 
'_mm_subs_epu8' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
            e = _mm_subs_epu8(e, vGapE);
                ^
skbio/alignment/_lib/ssw.c:229:17: error: always_inline function '_mm_max_epu8' 
requires target feature 'sse2', but would be inlined into function 
'sw_sse2_byte' that is compiled without support for 'sse2'
            e = _mm_max_epu8(e, vH);
                ^
skbio/alignment/_lib/ssw.c:230:13: error: always_inline function 
'_mm_store_si128' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
            _mm_store_si128(pvE + j, e);
            ^
skbio/alignment/_lib/ssw.c:233:18: error: always_inline function 
'_mm_subs_epu8' requires target feature 'sse2', but would be inlined into 
function 'sw_sse2_byte' that is compiled without support for 'sse2'
            vF = _mm_subs_epu8(vF, vGapE);
                 ^
skbio/alignment/_lib/ssw.c:234:18: error: always_inline function '_mm_max_epu8' 
requires target feature 'sse2', but would be inlined into function 
'sw_sse2_byte' that is compiled without support for 'sse2'
            vF = _mm_max_epu8(vF, vH);
                 ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
error: command 'cc' failed with exit status 1
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/py-scikit-bio
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