xb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ncbi-blast+-2.10.0_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.14.6.txz
[121armv7-quarterly-job-04] Installing pkg-1.14.6...
[121armv7-quarterly-job-04] Extracting pkg-1.14.6: .......... done
===> ncbi-blast+-2.10.0_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-blast+-2.10.0_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.10.0_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.10.0_1 for building
=> SHA256 Checksum OK for ncbi-blast-2.10.0+-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.10.0_1 for building
===> Extracting for ncbi-blast+-2.10.0_1
=> SHA256 Checksum OK for ncbi-blast-2.10.0+-src.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
<snip>
/bin/rm -f libvariation.a .libvariation.a.stamp
ar cr libvariation.a variation__.o variation___.o
/bin/sh
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/scripts/common/impl/if_diff.sh
/bin/ln -f libvariation.a
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/lib
/bin/ln -f libvariation.a
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/lib/libvariation.a
/bin/ln -f .variation.dep
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/status/.variation.dep
gmake[5]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects/variation'
/usr/local/bin/gmake -C macro -w all_r || exit 5
gmake[4]: Entering directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects/macro'
/bin/mkdir -p `/usr/bin/dirname
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/unit_test/Makefile.in`
test -f
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/unit_test/Makefile.in
|| /bin/cp -p
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/build-system/Makefile.in.skel
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/unit_test/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/scripts/common/impl/update_configurable.sh
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT
unit_test/Makefile
config.status: creating
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile
cd
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro
&&
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/new_module.sh
macro all
Platform not defined for FreeBSD arm -- please fix me
/usr/local/bin/gmake -w -f
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/build-system/Makefile.module
MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT=''
IMPDEPS='' IMPFILES=''
top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++
builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build
DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/bin/datatool
DATATOOL_WRAPPER=''
MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src
all
gmake[5]: Entering directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro'
gmake[5]: Entering directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro'
gmake[5]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro'
/usr/local/bin/gmake -f
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl
srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro
TMPL=macro -w export-headers
gmake[5]: Entering directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects/macro'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects/macro'
/usr/local/bin/gmake -f
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl
srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro
TMPL=macro -w all
/usr/local/bin/gmake -w -f
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/build-system/Makefile.module
MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT=''
IMPDEPS='' IMPFILES=''
top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++
builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build
DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/bin/datatool
DATATOOL_WRAPPER=''
MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src
all
gmake[5]: Entering directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro'
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:
In function 'bool ncbi::objects::s_WholeWordReplaceNocase(std::string&, const
string&, const string&)':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:61:84:
warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString,
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence,
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
61 | size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst,
NStr::eNocase);
|
^
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistd.hpp:37,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/serial/serialbase.hpp:35,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistr.hpp:5295:11:
note: declared here
5295 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:61:84:
warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString,
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence,
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
61 | size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst,
NStr::eNocase);
|
^
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistd.hpp:37,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/serial/serialbase.hpp:35,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistr.hpp:5295:11:
note: declared here
5295 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:74:103:
warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString,
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence,
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
74 | pos = NStr::Find(val, find, pos + repl.length(),
string::npos, NStr::eFirst, NStr::eNocase);
|
^
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistd.hpp:37,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/serial/serialbase.hpp:35,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistr.hpp:5295:11:
note: declared here
5295 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:74:103:
warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString,
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence,
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
74 | pos = NStr::Find(val, find, pos + repl.length(),
string::npos, NStr::eFirst, NStr::eNocase);
|
^
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistd.hpp:37,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/serial/serialbase.hpp:35,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistr.hpp:5295:11:
note: declared here
5295 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:76:91:
warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString,
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence,
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
76 | pos = NStr::Find(val, find, pos + 1, string::npos,
NStr::eFirst, NStr::eNocase);
|
^
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistd.hpp:37,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/serial/serialbase.hpp:35,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistr.hpp:5295:11:
note: declared here
5295 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:76:91:
warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString,
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence,
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
76 | pos = NStr::Find(val, find, pos + 1, string::npos,
NStr::eFirst, NStr::eNocase);
|
^
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistd.hpp:37,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/serial/serialbase.hpp:35,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistr.hpp:5295:11:
note: declared here
5295 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:
In function 'bool ncbi::objects::s_ReplaceNocase(std::string&, const string&,
const string&)':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:88:84:
warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString,
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence,
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
88 | size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst,
NStr::eNocase);
|
^
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistd.hpp:37,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/serial/serialbase.hpp:35,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistr.hpp:5295:11:
note: declared here
5295 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:88:84:
warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString,
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence,
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
88 | size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst,
NStr::eNocase);
|
^
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistd.hpp:37,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/serial/serialbase.hpp:35,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistr.hpp:5295:11:
note: declared here
5295 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:99:99:
warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString,
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence,
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
99 | pos = NStr::Find(val, find, pos + repl.length(), string::npos,
NStr::eFirst, NStr::eNocase);
|
^
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistd.hpp:37,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/serial/serialbase.hpp:35,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistr.hpp:5295:11:
note: declared here
5295 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/Replace_func.cpp:99:99:
warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString,
ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence,
ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
99 | pos = NStr::Find(val, find, pos + repl.length(), string::npos,
NStr::eFirst, NStr::eNocase);
|
^
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistd.hpp:37,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/serial/serialbase.hpp:35,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include/corelib/ncbistr.hpp:5295:11:
note: declared here
5295 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp:158:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/String_constraint.cpp:
In member function 'ncbi::CTempString
ncbi::objects::CString_constraint::x_GetConstraintString(ncbi::objects::CString_constraint::ECase)
const':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/String_constraint.cpp:479:1:
warning: control reaches end of non-void function [-Wreturn-type]
479 | }
| ^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/String_constraint.cpp:
In member function 'ncbi::CTempString
ncbi::objects::CString_constraint::x_GetCompareString(const
ncbi::objects::CMatchString&, ncbi::objects::CString_constraint::ECase) const':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/String_constraint.cpp:513:1:
warning: control reaches end of non-void function [-Wreturn-type]
513 | }
| ^
qemu: uncaught target signal 11 (Segmentation fault) - core dumped
g++9: internal compiler error: Segmentation fault signal terminated program
cc1plus
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://gcc.gnu.org/bugs/> for instructions.
gmake[5]: ***
[/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/Makefile.rules:88:
macro__.o] Error 4
gmake[5]: Entering directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects/macro'
Updating dependency information for
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro___.cpp.
Updating dependency information for
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp.
/usr/local/bin/g++9 -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp
-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9
-Wl,-rpath=/usr/local/lib/gcc9 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE
-D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL
-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/inc
-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/include
-DNCBI_BUILD_SESSION_ID=a6d2fef0-d0a7-11ea-0000-000000000000
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/objects/macro/macro__.cpp
-o macro__.o
gmake[5]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects/macro'
FAILED: src/objects/macro/Makefile.macro.lib
gmake[5]: Entering directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects/macro'
/bin/rm -f libmacro.a .macro.dep .libmacro.a.stamp
/bin/rm -f
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/lib/libmacro.a
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/status/.macro.dep
\
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/lib/libmacro-static.a
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/status/.macro-static.dep
gmake[5]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: ***
[/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/build-system/Makefile.meta_l:318:
all.nonusr] Error 2
gmake[4]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects/macro'
gmake[3]: ***
[/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/build-system/Makefile.meta_r:41:
all_r.real] Error 5
gmake[3]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build/objects'
gmake[2]: ***
[/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/src/build-system/Makefile.meta_r:41:
all_r.real] Error 5
gmake[2]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++/ReleaseMT/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.10.0+-src/c++'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-blast+
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