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Maintainer: [email protected] Last committer: [email protected] Ident: $FreeBSD: head/biology/avida/Makefile 515272 2019-10-23 16:25:10Z pkubaj $ Log URL: http://beefy18.nyi.freebsd.org/data/head-amd64-default/p545731_s364466/logs/avida-2.12.4.log Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p545731_s364466 Log: =>> Building biology/avida build started at Sun Aug 23 20:22:14 UTC 2020 port directory: /usr/ports/biology/avida package name: avida-2.12.4 building for: FreeBSD head-amd64-default-job-03 13.0-CURRENT FreeBSD 13.0-CURRENT 1300110 amd64 maintained by: [email protected] Makefile ident: $FreeBSD: head/biology/avida/Makefile 515272 2019-10-23 16:25:10Z pkubaj $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300100 Jail OSVERSION: 1300110 Job Id: 03 !!! Jail is newer than host. (Jail: 1300110, Host: 1300100) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300110 UNAME_v=FreeBSD 13.0-CURRENT 1300110 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for avida-2.12.4: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/avida/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/avida/work HOME=/wrkdirs/usr/ports/biology/avida/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/avida/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/avida/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/avida/work HOME=/wrkdirs/usr/ports/biology/avida/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/avida/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/avida/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=gnu++98 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" CMAKE_BUILD_TYPE="release" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/avida" EXAMPLESDIR="share/examples/avida" DATADIR="share/avida" WWWDIR="www/avida" ETCDIR="etc/avida" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/avida DOCSDIR=/usr/local/share/doc/avida EXAMPLESDIR=/usr/local/share/examples/avida WWWDIR=/usr/local/www/avida ETCDIR=/usr/local/etc/avida --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 ([email protected]:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.0 ([email protected]:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 ([email protected]:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300110 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> NOTICE: The avida port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> avida-2.12.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.14.7.txz [head-amd64-default-job-03] Installing pkg-1.14.7... [head-amd64-default-job-03] Extracting pkg-1.14.7: .......... done ===> avida-2.12.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of avida-2.12.4 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> NOTICE: The avida port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by avida-2.12.4 for building =========================================================================== =======================<phase: checksum >============================ ===> NOTICE: <snip> In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:12: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:39: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cStats.h:44: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataManager.h:32: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:59:45: warning: unused parameter 'target' [-Wunused-parameter] virtual cString GetDesc(const TargetType* target, const cFlexVar& idx) const { return m_desc; } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:59:69: warning: unused parameter 'idx' [-Wunused-parameter] virtual cString GetDesc(const TargetType* target, const cFlexVar& idx) const { return m_desc; } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:64:32: warning: unused parameter 'target' [-Wunused-parameter] virtual bool Set(TargetType* target, const cFlexVar&, const cStringList&, const cString&) const { return false; } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:170:58: warning: unused parameter 'idx' [-Wunused-parameter] cFlexVar Get(const TargetType* target, const cFlexVar& idx, const cStringList& args) const ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:170:82: warning: unused parameter 'args' [-Wunused-parameter] cFlexVar Get(const TargetType* target, const cFlexVar& idx, const cStringList& args) const ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:196:82: warning: unused parameter 'args' [-Wunused-parameter] cFlexVar Get(const TargetType* target, const cFlexVar& idx, const cStringList& args) const ^ In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:12: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:39: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cStats.h:731:25: warning: unused parameter 'res_comb_index' [-Wunused-parameter] void AddLastSense(int res_comb_index) { /*sense_last_count[res_comb_index]++;*/ } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cStats.h:732:33: warning: unused parameter 'res_comb_index' [-Wunused-parameter] void IncLastSenseExeCount(int res_comb_index, int count) { /*sense_last_exe_count[res_comb_index]+= count;*/ } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cStats.h:732:53: warning: unused parameter 'count' [-Wunused-parameter] void IncLastSenseExeCount(int res_comb_index, int count) { /*sense_last_exe_count[res_comb_index]+= count;*/ } ^ In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:14: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDeme.h:31: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:72:53: warning: unused parameter 's' [-Wunused-parameter] virtual void BroadcastToNeighbors(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:72:69: warning: unused parameter 'msg' [-Wunused-parameter] virtual void BroadcastToNeighbors(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:72:96: warning: unused parameter 'pop_interface' [-Wunused-parameter] virtual void BroadcastToNeighbors(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:75:40: warning: unused parameter 's' [-Wunused-parameter] virtual void Unicast(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:75:56: warning: unused parameter 'msg' [-Wunused-parameter] virtual void Unicast(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:75:83: warning: unused parameter 'pop_interface' [-Wunused-parameter] virtual void Unicast(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:78:39: warning: unused parameter 's' [-Wunused-parameter] virtual void Rotate(cPopulationCell& s, int x) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:78:46: warning: unused parameter 'x' [-Wunused-parameter] virtual void Rotate(cPopulationCell& s, int x) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:81:39: warning: unused parameter 's' [-Wunused-parameter] virtual void Select(cPopulationCell& s, int x) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:81:46: warning: unused parameter 'x' [-Wunused-parameter] virtual void Select(cPopulationCell& s, int x) { } ^ In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:14: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDeme.h:35: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cResourceCount.h:28: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cSpatialResCount.h:137:56: warning: unused parameter 'ctx' [-Wunused-parameter] virtual void SetProbabilisticResource(cAvidaContext& ctx, double, double, double, double, double, int, int, int) { ; } ^ 31 warnings generated. [172/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=gnu++98 -funr oll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT avida-core/CMakeFiles/avida.dir/source/targets/avida/primitive.cc.o -MF avida-core/CMakeFiles/avida.dir/source/targets/avida/primitive.cc.o.d -o avida-core/CMakeFiles/avida.dir/source/targets/avida/primitive.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:31: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:30: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/cDataFileManager.h:20: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDictionary.h:40: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tHashMap.h:32: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/nHashTable.h:29: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/cBitArray.h:99:55: warning: unused parameter 'in_array' [-Wunused-parameter] const cRawBitArray & operator=(const cRawBitArray & in_array) ^ In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:31: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:31: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/cRandom.h:268:127: warning: unused parameter 'rng' [-Wunused-parameter] void sample_without_replacement(ForwardIterator first, ForwardIterator last, OutputIterator ofirst, OutputIterator olast, RNG rng) { ^ In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:31: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:42: warning: unused parameter 'org' [-Wunused-parameter] virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:70: warning: unused parameter 'cell' [-Wunused-parameter] virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:90: warning: unused parameter 'merit' [-Wunused-parameter] virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:101: warning: unused parameter 'lineage' [-Wunused-parameter] virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:146:54: warning: unused parameter 'cell' [-Wunused-parameter] virtual bool IsWorldBoundary(const cPopulationCell& cell) { return false; } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:149:48: warning: unused parameter 'ctx' [-Wunused-parameter] virtual void ProcessPostUpdate(cAvidaContext& ctx) { } ^ 8 warnings generated. [173/183] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=gnu++98 -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fstack-protector-strong avida-core/CMakeFiles/avida.dir/source/targets/avida/primitive.cc.o -o bin/avida lib/libavidacore.a lib/libapto.a lib/libtcmalloc-1.4.a -pthread && : FAILED: bin/avida : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=gnu++98 -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fstack-protector-strong avida-core/CMakeFiles/avida.dir/source/targets/avida/primitive.cc.o -o bin/avida lib/libavidacore.a lib/libapto.a lib/libtcmalloc-1.4.a -pthread && : ld: error: undefined symbol: std::__1::__rs_get() >>> referenced by cPopulation.cc >>> cPopulation.cc.o:(void >>> std::__1::random_shuffle<std::__1::__wrap_iter<unsigned long*> >>> >(std::__1::__wrap_iter<unsigned long*>, std::__1::__wrap_iter<unsigned >>> long*>)) in archive lib/libavidacore.a ld: error: undefined symbol: std::__1::__rs_default::~__rs_default() >>> referenced by cPopulation.cc >>> cPopulation.cc.o:(void >>> std::__1::random_shuffle<std::__1::__wrap_iter<unsigned long*> >>> >(std::__1::__wrap_iter<unsigned long*>, std::__1::__wrap_iter<unsigned >>> long*>)) in archive lib/libavidacore.a >>> referenced by cPopulation.cc >>> cPopulation.cc.o:(void >>> std::__1::random_shuffle<std::__1::__wrap_iter<unsigned long*> >>> >(std::__1::__wrap_iter<unsigned long*>, std::__1::__wrap_iter<unsigned >>> long*>)) in archive lib/libavidacore.a ld: error: undefined symbol: std::__1::__rs_default::operator()() >>> referenced by cPopulation.cc >>> cPopulation.cc.o:(long >>> std::__1::uniform_int_distribution<long>::operator()<std::__1::__rs_default>(std::__1::__rs_default&, >>> std::__1::uniform_int_distribution<long>::param_type const&)) in archive >>> lib/libavidacore.a >>> referenced by cPopulation.cc >>> cPopulation.cc.o:(long >>> std::__1::uniform_int_distribution<long>::operator()<std::__1::__rs_default>(std::__1::__rs_default&, >>> std::__1::uniform_int_distribution<long>::param_type const&)) in archive >>> lib/libavidacore.a >>> referenced by cPopulation.cc >>> cPopulation.cc.o:(long >>> std::__1::uniform_int_distribution<long>::operator()<std::__1::__rs_default>(std::__1::__rs_default&, >>> std::__1::uniform_int_distribution<long>::param_type const&)) in archive >>> lib/libavidacore.a >>> referenced 1 more times c++: error: linker command failed with exit code 1 (use -v to see invocation) [174/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=gnu++98 -funr oll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cSymbolUtil.cc.o -MF avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cSymbolUtil.cc.o.d -o avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cSymbolUtil.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:12: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.h:33: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cInstSet.h:32: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cInstLib.h:30: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDictionary.h:40: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tHashMap.h:32: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/nHashTable.h:29: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/cBitArray.h:99:55: warning: unused parameter 'in_array' [-Wunused-parameter] const cRawBitArray & operator=(const cRawBitArray & in_array) ^ In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:12: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.h:232:44: warning: unused parameter 'in_hardware' [-Wunused-parameter] virtual void InheritState(cHardwareBase& in_hardware) { ; } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.h:236:40: warning: unused parameter 'jump_label' [-Wunused-parameter] virtual bool Jump_To_Alarm_Label(int jump_label) { return false; } ^ In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/cRandom.h:268:127: warning: unused parameter 'rng' [-Wunused-parameter] void sample_without_replacement(ForwardIterator first, ForwardIterator last, OutputIterator ofirst, OutputIterator olast, RNG rng) { ^ In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:42: warning: unused parameter 'org' [-Wunused-parameter] virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:70: warning: unused parameter 'cell' [-Wunused-parameter] virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:90: warning: unused parameter 'merit' [-Wunused-parameter] virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:101: warning: unused parameter 'lineage' [-Wunused-parameter] virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:146:54: warning: unused parameter 'cell' [-Wunused-parameter] virtual bool IsWorldBoundary(const cPopulationCell& cell) { return false; } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:149:48: warning: unused parameter 'ctx' [-Wunused-parameter] virtual void ProcessPostUpdate(cAvidaContext& ctx) { } ^ In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:661:32: warning: unused parameter 'i' [-Wunused-parameter] void IncSenseCount(const int i) { /*assert(initialized == true); cur_sense_count[i]++;*/ } ^ In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:15: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:17: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView_Base.h:23:41: warning: unused parameter 'ctx' [-Wunused-parameter] virtual void NewUpdate(cAvidaContext& ctx) { ; } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView_Base.h:24:44: warning: unused parameter 'ctx' [-Wunused-parameter] virtual void NotifyUpdate(cAvidaContext& ctx) { ; } ^ 13 warnings generated. ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/avida _______________________________________________ [email protected] mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "[email protected]"
