You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     w...@freebsd.org
Last committer: mar...@freebsd.org
Ident:          $FreeBSD: head/biology/embassy/Makefile 355684 2014-05-29 
10:47:58Z marino $
Log URL:        
http://beefy1.isc.freebsd.org/bulk/head-i386-default/2014-06-06_04h55m32s/logs/embassy-6.2.0_2.log
Build URL:      
http://beefy1.isc.freebsd.org/bulk/head-i386-default/2014-06-06_04h55m32s
Log:

====>> Building biology/embassy
build started at Fri Jun  6 20:03:58 UTC 2014
port directory: /usr/ports/biology/embassy
building for: FreeBSD head-i386-default-job-13 11.0-CURRENT FreeBSD 
11.0-CURRENT r264257 i386
maintained by: w...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/embassy/Makefile 355684 2014-05-29 
10:47:58Z marino $
Poudriere version: 3.1-pre
Host OSVERSION: 1100013
Jail OSVERSION: 1100018




!!! Jail is newer than host. (Jail: 1100018, Host: 1100013) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
UNAME_m=i386
UNAME_p=i386
OSVERSION=1100018
UNAME_v=FreeBSD 11.0-CURRENT r264257
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/build/head-i386-default/ref
PKG_EXT=txz
tpid=49827
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=embassy-6.2.0_2
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
OLDPWD=/usr/local/poudriere/data/build/head-i386-default/ref/poudriere/rdeps
PWD=/usr/local/poudriere/data/build/head-i386-default/ref/poudriere/pool
MASTERNAME=head-i386-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for embassy-6.2.0_2:
     CBSTOOLS=on: CBS Tools
     DOMAINATRIX=on: Protein domain apps
     DOMALIGN=on: Protein domain apps
     DOMSEARCH=on: Protein domain apps
     EMNU=on: EMBOSS simple menu
     ESIM4=on: Align cDNA/EST to genome
     HMMER=on: HMM alignment and searches
     IPRSCAN=on: InterPro scan
     MEMENEW=on: Motif detection
     MIRA=on: Whole Genome shotgun and EST assembler
     MSE=on: A multiple sequence screen editor
     MYEMBOSS=on: Examples for developers of EMBOSS apps
     PHYLIPNEW=on: Phylogeny inference
     SIGNATURE=on: Protein domain apps
     STRUCTURE=on: Protein domain apps
     TOPO=on: Transmembrane display
     VIENNA=on: RNA folding
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--x-libraries=/usr/local/lib --x-includes=/usr/local/include 
--prefix=/usr/local/emboss ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
CPPFLAGS="-I/usr/local/emboss/include -I/usr/local/include 
-I/usr/local/emboss/include" LDFLAGS=" -L/usr/local/emboss/lib -L/usr/local/lib 
-L/usr/local/emboss/lib" TMPDIR="/tmp" TMPDIR="/tmp" MAKE=gmake SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" MOTIFLIB="-L/usr/local/lib -lXm -lXp" SHELL=/bin/sh 
NO_LINT=YES PREFIX=/usr/local/emboss  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  
CC="cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing"  CPP="cpp" 
CPPFLAGS="-I/usr/local/emboss/include -I/usr/local/include 
-I/usr/local/emboss/include"  LDFLAGS=" -L/usr/local/emboss/lib 
-L/usr/local/lib -L/usr/local/emboss/lib"  CXX="c++" CXXFLAGS="-O2 -pipe 
-fno-strict-aliasing"  MANPREFIX="/usr/local/emboss" 
BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 555"  
BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  
BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  
BSD_INSTALL_DATA="install  -o root -g wheel -m 444"  BSD_INSTALL_MAN="install  
-o root -g wheel -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PLIST_DOMAINATRIX=""
PLIST_EMNU=""
PLIST_ESIM4=""
PLIST_HMMER=""
PLIST_MEMENEW=""
PLIST_MSE=""
PLIST_PHYLIPNEW=""
PLIST_TOPO=""
PLIST_DOMALIGN=""
PLIST_DOMSEARCH=""
PLIST_SIGNATURE=""
PLIST_STRUCTURE=""
PLIST_MYEMBOSS=""
PLIST_VIENNA=""
PLIST_MIRA=""
PLIST_IPRSCAN=""
PLIST_CBSTOOLS=""
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
PORTDATA=""
LIB32DIR=lib
DOCSDIR="share/doc/embassy"
EXAMPLESDIR="share/examples/embassy"
DATADIR="share/embassy"
WWWDIR="www/embassy"
ETCDIR="etc/embassy"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local/emboss
LOCALBASE=/usr/local
DATADIR=/usr/local/emboss/share/embassy
DOCSDIR=/usr/local/emboss/share/doc/embassy
EXAMPLESDIR=/usr/local/emboss/share/examples/embassy
WWWDIR=/usr/local/emboss/www/embassy
ETCDIR=/usr/local/emboss/etc/embassy
--End SUB_LIST--

---Begin make.conf---
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
# clean-restricted via poudriere.conf NO_RESTRICTED
#NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===>  Cleaning for embassy-6.2.0_2
=======================<phase: check-sanity   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   embassy-6.2.0_2 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.2.7_2.txz
Installing pkg-1.2.7_2... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of embassy-6.2.0_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===> Fetching all distfiles required by embassy-6.2.0_2 for building
===========================================================================
=======================<phase: checksum       >============================
===> Fetching all distfiles required by embassy-6.2.0_2 for building
=> SHA256 Checksum OK for emboss/DOMAINATRIX-0.1.0.tar.gz.
=> SHA256 Checksum OK for emboss/EMNU-1.05.tar.gz.
=> SHA256 Checksum OK for emboss/ESIM4-1.0.0.tar.gz.
=> SHA256 Checksum OK for emboss/HMMER-2.3.2.tar.gz.
=> SHA256 Checksum OK for emboss/MEMENEW-4.0.0.tar.gz.
=> SHA256 Checksum OK for emboss/MSE-3.0.0.tar.gz.
=> SHA256 Checksum OK for emboss/PHYLIPNEW-3.69.tar.gz.
=> SHA256 Checksum OK for emboss/TOPO-2.0.0.tar.gz.
=> SHA256 Checksum OK for emboss/DOMALIGN-0.1.0.tar.gz.
=> SHA256 Checksum OK for emboss/DOMSEARCH-0.1.0.tar.gz.
=> SHA256 Checksum OK for emboss/SIGNATURE-0.1.0.tar.gz.
=> SHA256 Checksum OK for emboss/STRUCTURE-0.1.0.tar.gz.
=> SHA256 Checksum OK for emboss/MYEMBOSS-6.2.0.tar.gz.
=> SHA256 Checksum OK for emboss/VIENNA-1.7.2.tar.gz.
=> SHA256 Checksum OK for emboss/MIRA-2.8.2.tar.gz.
=> SHA256 Checksum OK for emboss/IPRSCAN-4.3.1.tar.gz.
=> SHA256 Checksum OK for emboss/CBSTOOLS-1.0.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===> Fetching all distfiles required by embassy-6.2.0_2 for building
===>  Extracting for embassy-6.2.0_2
===> Fetching all distfiles required by embassy-6.2.0_2 for building
=> SHA256 Checksum OK for emboss/DOMAINATRIX-0.1.0.tar.gz.
=> SHA256 Checksum OK for emboss/EMNU-1.05.tar.gz.
=> SHA256 Checksum OK for emboss/ESIM4-1.0.0.tar.gz.
=> SHA256 Checksum OK for emboss/HMMER-2.3.2.tar.gz.
=> SHA256 Checksum OK for emboss/MEMENEW-4.0.0.tar.gz.
=> SHA256 Checksum OK for emboss/MSE-3.0.0.tar.gz.
=> SHA256 Checksum OK for emboss/PHYLIPNEW-3.69.tar.gz.
=> SHA256 Checksum OK for emboss/TOPO-2.0.0.tar.gz.
=> SHA256 Checksum OK for emboss/DOMALIGN-0.1.0.tar.gz.
=> SHA256 Checksum OK for emboss/DOMSEARCH-0.1.0.tar.gz.
=> SHA256 Checksum OK for emboss/SIGNATURE-0.1.0.tar.gz.
=> SHA256 Checksum OK for emboss/STRUCTURE-0.1.0.tar.gz.
<snip>
checking for vfork.h... (cached) no
checking for fork... (cached) yes
checking for vfork... (cached) yes
checking for working fork... yes
checking for working vfork... (cached) yes
checking for vprintf... (cached) yes
checking for _doprnt... no
checking for strdup... (cached) yes
checking for strstr... yes
checking for strchr... yes
checking for erand48... yes
checking for memmove... (cached) yes
checking X11/Xlib.h usability... yes
checking X11/Xlib.h presence... yes
checking for X11/Xlib.h... yes
checking for gethostbyname in -lc... yes
checking for socket in -lc... yes
checking for main in -lm... yes
checking for main in -liconv... no
checking if docroot is given... no
checking if gcc profiling is selected... no
checking if java include directory given... no
checking if java OS include directory given... no
checking if png driver is wanted... yes
checking for inflateEnd in -lz... no
No png driver will be made due to librarys missing/old.
checking if any authorisation type is given... no
checking if Linux x86_64... no
checking for large file support... done
checking for purify... no
checking for cygwin... no
checking if any threading type is given... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating emboss_acd/Makefile
config.status: creating emboss_doc/Makefile
config.status: creating emboss_doc/html/Makefile
config.status: creating emboss_doc/text/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
configure: loading site script /usr/ports/Templates/config.site
checking for a BSD-compatible install... (cached) /usr/bin/install
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking build system type... i386-unknown-freebsd11.0
checking host system type... i386-unknown-freebsd11.0
checking for style of include used by gmake... GNU
checking for gcc... no
checking for cc... cc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking dependency style of cc... gcc3
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... (cached) /usr/bin/fgrep
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... no
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from cc object... ok
checking how to run the C preprocessor... cc -E
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... yes
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... freebsd11.0 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gawk... (cached) /usr/bin/awk
checking whether we are using the GNU C compiler... (cached) yes
checking whether cc accepts -g... (cached) yes
checking for cc option to accept ISO C89... (cached) none needed
checking dependency style of cc... (cached) gcc3
checking how to run the C preprocessor... cc -E
checking whether byte ordering is bigendian... no
checking for a BSD-compatible install... /usr/bin/install
checking whether ln -s works... yes
checking whether gmake sets $(MAKE)... (cached) yes
checking for X... libraries /usr/local/lib, headers /usr/local/include
checking whether -R must be followed by a space... neither works
checking for gethostbyname... (cached) yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for ANSI C header files... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for pid_t... (cached) yes
checking for size_t... (cached) yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking whether getpgrp requires zero arguments... (cached) yes
checking for strftime... (cached) yes
checking for vfork.h... (cached) no
checking for fork... (cached) yes
checking for vfork... (cached) yes
checking for working fork... yes
checking for working vfork... (cached) yes
checking for vprintf... (cached) yes
checking for _doprnt... no
checking for strdup... (cached) yes
checking for strstr... yes
checking for strchr... yes
checking for erand48... yes
checking for memmove... (cached) yes
checking X11/Xlib.h usability... yes
checking X11/Xlib.h presence... yes
checking for X11/Xlib.h... yes
checking for gethostbyname in -lc... yes
checking for socket in -lc... yes
checking for main in -lm... yes
checking for main in -liconv... no
checking if docroot is given... no
checking if gcc profiling is selected... no
checking if java include directory given... no
checking if java OS include directory given... no
checking if png driver is wanted... yes
checking for inflateEnd in -lz... no
No png driver will be made due to librarys missing/old.
checking if any authorisation type is given... no
checking if Linux x86_64... no
checking for large file support... done
checking for purify... no
checking for cygwin... no
checking if any threading type is given... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating emboss_acd/Makefile
config.status: creating emboss_doc/Makefile
config.status: creating emboss_doc/html/Makefile
config.status: creating emboss_doc/text/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
===========================================================================
=======================<phase: build          >============================
===>  Building for embassy-6.2.0_2
gmake[2]: Entering directory 
`/wrkdirs/usr/ports/biology/embassy/work/embassy-6.2.0/EMBASSY/DOMAINATRIX-0.1.0'
Making all in src
gmake[3]: Entering directory 
`/wrkdirs/usr/ports/biology/embassy/work/embassy-6.2.0/EMBASSY/DOMAINATRIX-0.1.0/src'
cc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" 
-DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"DOMAINATRIX\" 
-DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 
-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 
-DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 
-DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 
-DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 
-DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 
-DHAVE_LIBM=1 -I. -I/usr/local/emboss/include 
-I/usr/local/emboss/include/eplplot  -DAJ_FreeBSDLF -I/usr/local/emboss/include 
-I/usr/local/include -I/usr/local/emboss/include -DLENDIAN -DNO_AUTH    -O2  
-I/usr/local/include -MT cathparse.o -MD -MP -MF .deps/cathparse.Tpo -c -o 
cathparse.o cathparse.c
mv -f .deps/cathparse.Tpo .deps/cathparse.Po
/bin/sh ../libtool --tag=CC   --mode=link cc    -O2  -I/usr/local/include  
-L/usr/local/emboss/lib -L/usr/local/lib -L/usr/local/emboss/lib -o cathparse 
cathparse.o -L/usr/local/emboss/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg 
-lajax -leexpat -lepcre -lezlib -leplplot -L/usr/local/lib -lX11  -liconv -lm 
libtool: link: cc -O2 -I/usr/local/include -o cathparse cathparse.o  
-L/usr/local/emboss/lib -L/usr/local/lib /usr/local/emboss/lib/libnucleus.so 
/usr/local/emboss/lib/libacd.so /usr/local/emboss/lib/libajaxdb.so 
/usr/local/emboss/lib/libensembl.so /usr/local/emboss/lib/libajaxg.so 
/usr/local/emboss/lib/libajax.so /usr/local/emboss/lib/libeexpat.so 
/usr/local/emboss/lib/libepcre.so /usr/local/emboss/lib/libezlib.so 
/usr/local/emboss/lib/libeplplot.so /usr/local/lib/libX11.so -liconv -lm 
-Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath 
-Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib
/usr/bin/ld: cannot find -liconv
cc: error: linker command failed with exit code 1 (use -v to see invocation)
gmake[3]: *** [cathparse] Error 1
gmake[3]: Leaving directory 
`/wrkdirs/usr/ports/biology/embassy/work/embassy-6.2.0/EMBASSY/DOMAINATRIX-0.1.0/src'
gmake[2]: *** [all-recursive] Error 1
gmake[2]: Leaving directory 
`/wrkdirs/usr/ports/biology/embassy/work/embassy-6.2.0/EMBASSY/DOMAINATRIX-0.1.0'
*** Error code 2

Stop.
make[1]: stopped in /usr/ports/biology/embassy
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/embassy
===>  Cleaning for embassy-6.2.0_2
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