You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sangw...@gmail.com
Last committer: zeis...@freebsd.org
Ident:          $FreeBSD: head/biology/protomol/Makefile 351411 2014-04-16 
18:28:47Z zeising $
Log URL:        
http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-06-13_11h07m42s/logs/protomol-2.0.3_9.log
Build URL:      
http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-06-13_11h07m42s
Log:

====>> Building biology/protomol
build started at Sat Jun 14 02:54:01 UTC 2014
port directory: /usr/ports/biology/protomol
building for: FreeBSD head-amd64-default-job-13 11.0-CURRENT FreeBSD 
11.0-CURRENT r267342 amd64
maintained by: sangw...@gmail.com
Makefile ident:      $FreeBSD: head/biology/protomol/Makefile 351411 2014-04-16 
18:28:47Z zeising $
Poudriere version: 3.1-pre
Host OSVERSION: 1100022
Jail OSVERSION: 1100022

---Begin Environment---
OSVERSION=1100022
UNAME_v=FreeBSD 11.0-CURRENT r267342
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/build/head-amd64-default/ref
PKG_EXT=txz
tpid=83821
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=protomol-2.0.3_9
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
OLDPWD=/usr/local/poudriere/data/build/head-amd64-default/ref/poudriere/rdeps
PWD=/usr/local/poudriere/data/build/head-amd64-default/ref/poudriere/pool
MASTERNAME=head-amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for protomol-2.0.3_9:
     GLUT=on: GLUT support
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--without-irix_mipspro_mpi --with-glut=yes --x-libraries=/usr/local/lib 
--x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS="-I/usr/local/include"  
LDFLAGS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing 
-L/usr/local/lib"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -o 
root -g wheel -m 555"  BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  
BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  
BSD_INSTALL_DATA="install  -o root -g wheel -m 444"  BSD_INSTALL_MAN="install  
-o root -g wheel -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
PORTDATA=""
LIB32DIR=lib
DOCSDIR="share/doc/protomol"
EXAMPLESDIR="share/examples/protomol"
DATADIR="share/protomol"
WWWDIR="www/protomol"
ETCDIR="etc/protomol"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/protomol
DOCSDIR=/usr/local/share/doc/protomol
EXAMPLESDIR=/usr/local/share/examples/protomol
WWWDIR=/usr/local/www/protomol
ETCDIR=/usr/local/etc/protomol
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
# clean-restricted ran via poudriere.conf NO_RESTRICTED
#NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===>  Cleaning for protomol-2.0.3_9
=======================<phase: check-sanity   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   protomol-2.0.3_9 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.2.7_2.txz
Installing pkg-1.2.7_2... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of protomol-2.0.3_9
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===> Fetching all distfiles required by protomol-2.0.3_9 for building
===========================================================================
=======================<phase: checksum       >============================
===> Fetching all distfiles required by protomol-2.0.3_9 for building
=> SHA256 Checksum OK for protomol-2.0.3-tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===> Fetching all distfiles required by protomol-2.0.3_9 for building
===>  Extracting for protomol-2.0.3_9
=> SHA256 Checksum OK for protomol-2.0.3-tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for protomol-2.0.3_9
===>  Applying FreeBSD patches for protomol-2.0.3_9
===========================================================================
=======================<phase: build-depends  >============================
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - 
not found
===>    Verifying install for /usr/local/libdata/pkgconfig/xmu.pc in 
/usr/ports/x11-toolkits/libXmu
===>   Installing existing package /packages/All/libXmu-1.1.2_2,1.txz
Installing libXmu-1.1.2_2,1...Installing libX11-1.6.2_2,1...Installing 
kbproto-1.0.6... done
Installing libXau-1.0.8_2...Installing xproto-7.0.25... done
 done
Installing libXdmcp-1.1.1_2... done
Installing libxcb-1.10_2...Installing libpthread-stubs-0.3_5... done
Installing libxml2-2.9.1_1... done
 done
 done
Installing libXext-1.3.2_2,1...Installing xextproto-7.3.0... done
 done
Installing libXt-1.1.4_2,1...Installing libSM-1.2.2_2,1...Installing 
libICE-1.0.8_2,1... done
 done
 done
 done
===>   Returning to build of protomol-2.0.3_9
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xt.pc - 
found
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/sm.pc - 
found
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/ice.pc - 
found
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xext.pc - 
found
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/x11.pc - 
found
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xi.pc - 
not found
===>    Verifying install for /usr/local/libdata/pkgconfig/xi.pc in 
/usr/ports/x11/libXi
===>   Installing existing package /packages/All/libXi-1.7.2_2,1.txz
Installing libXi-1.7.2_2,1...Installing inputproto-2.3... done
Installing libXfixes-5.0.1_2...Installing fixesproto-5.0... done
 done
 done
===>   Returning to build of protomol-2.0.3_9
===========================================================================
=======================<phase: lib-depends    >============================
===>   protomol-2.0.3_9 depends on shared library: libpng15.so - not found
===>    Verifying for libpng15.so in /usr/ports/graphics/png
===>   Installing existing package /packages/All/png-1.5.18.txz
Installing png-1.5.18... done
===>   Returning to build of protomol-2.0.3_9
===>   protomol-2.0.3_9 depends on shared library: libjpeg.so - not found
===>    Verifying for libjpeg.so in /usr/ports/graphics/jpeg
===>   Installing existing package /packages/All/jpeg-8_5.txz
Installing jpeg-8_5... done
===>   Returning to build of protomol-2.0.3_9
===>   protomol-2.0.3_9 depends on shared library: libtiff.so - not found
===>    Verifying for libtiff.so in /usr/ports/graphics/tiff
===>   Installing existing package /packages/All/tiff-4.0.3_3.txz
Installing tiff-4.0.3_3...Installing jbigkit-1.6... done
 done
===>   Returning to build of protomol-2.0.3_9
===>   protomol-2.0.3_9 depends on shared library: libglut.so - not found
===>    Verifying for libglut.so in /usr/ports/graphics/freeglut
===>   Installing existing package /packages/All/freeglut-2.8.1_2.txz
Installing freeglut-2.8.1_2...Installing libGLU-9.0.0...Installing 
libGL-9.1.7_1...Installing dri2proto-2.8... done
Installing expat-2.1.0... done
Installing libXdamage-1.1.4_2...Installing damageproto-1.2.1... done
 done
Installing libXxf86vm-1.1.3_2...Installing xf86vidmodeproto-2.3.1... done
 done
Installing libdrm-2.4.52...Installing libpciaccess-0.13.2_2...Installing 
pciids-20140526... done
 done
 done
Installing libglapi-9.1.7...Installing libxshmfence-1.1_2... done
 done
 done
 done
Installing libXrandr-1.4.2_2...Installing libXrender-0.9.8_2...Installing 
renderproto-0.11.1... done
 done
Installing randrproto-1.4.0... done
<snip>
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierShake.o `test -f 
'ModifierShake.cpp' || echo './'`ModifierShake.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierRattle.o `test -f 
'ModifierRattle.cpp' || echo './'`ModifierRattle.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNPTShake.o `test -f 
'ModifierNPTShake.cpp' || echo './'`ModifierNPTShake.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNPTRattle.o `test -f 
'ModifierNPTRattle.cpp' || echo './'`ModifierNPTRattle.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNVTShake.o `test -f 
'ModifierNVTShake.cpp' || echo './'`ModifierNVTShake.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNVTRattle.o `test -f 
'ModifierNVTRattle.cpp' || echo './'`ModifierNVTRattle.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o PLeapfrogIntegrator.o `test 
-f 'PLeapfrogIntegrator.cpp' || echo './'`PLeapfrogIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o MOLLYIntegrator.o `test -f 
'MOLLYIntegrator.cpp' || echo './'`MOLLYIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o UmbrellaIntegrator.o `test -f 
'UmbrellaIntegrator.cpp' || echo './'`UmbrellaIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o MTSIntegrator.o `test -f 
'MTSIntegrator.cpp' || echo './'`MTSIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o NoseNVTLeapfrogIntegrator.o 
`test -f 'NoseNVTLeapfrogIntegrator.cpp' || echo 
'./'`NoseNVTLeapfrogIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o PaulTrapIntegrator.o `test -f 
'PaulTrapIntegrator.cpp' || echo './'`PaulTrapIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o LangevinImpulseIntegrator.o 
`test -f 'LangevinImpulseIntegrator.cpp' || echo 
'./'`LangevinImpulseIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o StandardIntegrator.o `test -f 
'StandardIntegrator.cpp' || echo './'`StandardIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o STSIntegrator.o `test -f 
'STSIntegrator.cpp' || echo './'`STSIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
rm -f libintegrators.a
ar cru libintegrators.a ModifierMetaShake.o ModifierMetaRattle.o  
ModifierMetaRattleShake.o NPTVerletIntegrator.o  NVTVerletIntegrator.o 
BSplineMOLLYIntegrator.o  EquilibriumMOLLYIntegrator.o  DihedralHMCIntegrator.o 
DLMCIntegrator.o  ShadowHMCIntegrator.o HMCIntegrator.o  MCIntegrator.o 
ImpulseIntegrator.o  Integrator.o IntegratorDefinition.o  LeapfrogIntegrator.o 
DMDLeapfrogIntegrator.o  BBKIntegrator.o ModifierShake.o  ModifierRattle.o 
ModifierNPTShake.o  ModifierNPTRattle.o ModifierNVTShake.o  ModifierNVTRattle.o 
PLeapfrogIntegrator.o  MOLLYIntegrator.o UmbrellaIntegrator.o  MTSIntegrator.o 
NoseNVTLeapfrogIntegrator.o  PaulTrapIntegrator.o  LangevinImpulseIntegrator.o  
StandardIntegrator.o STSIntegrator.o NPTVerletIntegrator.o  
NVTVerletIntegrator.o 
ranlib libintegrators.a
Making all in frontend
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
HelpTextFactory.o `test -f 'HelpTextFactory.cpp' || echo 
'./'`HelpTextFactory.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
ForceFactoryDetails.o `test -f 'ForceFactoryDetails.cpp' || echo 
'./'`ForceFactoryDetails.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
InputPosVel.o `test -f 'InputPosVel.cpp' || echo './'`InputPosVel.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
InputPosVelType.o `test -f 'InputPosVelType.cpp' || echo 
'./'`InputPosVelType.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
IntegratorFactoryDetails.o `test -f 'IntegratorFactoryDetails.cpp' || echo 
'./'`IntegratorFactoryDetails.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
IntegratorFactoryDetails.cpp:178:13: warning: '&&' within '||' 
[-Wlogical-op-parentheses]
             i > 0 && dynamic_cast<const MTSIntegrator*>(prototype))){
             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
IntegratorFactoryDetails.cpp:178:13: note: place parentheses around the '&&' 
expression to silence this warning
             i > 0 && dynamic_cast<const MTSIntegrator*>(prototype))){
                   ^
             (                                                     )
1 warning generated.
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
Output.o `test -f 'Output.cpp' || echo './'`Output.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputCache.o `test -f 'OutputCache.cpp' || echo './'`OutputCache.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputCollection.o `test -f 'OutputCollection.cpp' || echo 
'./'`OutputCollection.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputDCDTrajectory.o `test -f 'OutputDCDTrajectory.cpp' || echo 
'./'`OutputDCDTrajectory.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputDiffusion.o `test -f 'OutputDiffusion.cpp' || echo 
'./'`OutputDiffusion.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputDihedrals.o `test -f 'OutputDihedrals.cpp' || echo 
'./'`OutputDihedrals.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputEnergies.o `test -f 'OutputEnergies.cpp' || echo './'`OutputEnergies.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFactoryDetails.o `test -f 'OutputFactoryDetails.cpp' || echo 
'./'`OutputFactoryDetails.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFile.o `test -f 'OutputFile.cpp' || echo './'`OutputFile.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFinalXYZBinPos.o `test -f 'OutputFinalXYZBinPos.cpp' || echo 
'./'`OutputFinalXYZBinPos.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFinalXYZBinVel.o `test -f 'OutputFinalXYZBinVel.cpp' || echo 
'./'`OutputFinalXYZBinVel.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFinalXYZPos.o `test -f 'OutputFinalXYZPos.cpp' || echo 
'./'`OutputFinalXYZPos.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFinalPDBPos.o `test -f 'OutputFinalPDBPos.cpp' || echo 
'./'`OutputFinalPDBPos.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFinalXYZVel.o `test -f 'OutputFinalXYZVel.cpp' || echo 
'./'`OutputFinalXYZVel.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputMomentum.o `test -f 'OutputMomentum.cpp' || echo './'`OutputMomentum.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputPaulTrap.o `test -f 'OutputPaulTrap.cpp' || echo './'`OutputPaulTrap.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputPDBFramePos.o `test -f 'OutputPDBFramePos.cpp' || echo 
'./'`OutputPDBFramePos.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputScreen.o `test -f 'OutputScreen.cpp' || echo './'`OutputScreen.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputTemperatures.o `test -f 'OutputTemperatures.cpp' || echo 
'./'`OutputTemperatures.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputXYZTrajectoryForce.o `test -f 'OutputXYZTrajectoryForce.cpp' || echo 
'./'`OutputXYZTrajectoryForce.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputXYZTrajectoryPos.o `test -f 'OutputXYZTrajectoryPos.cpp' || echo 
'./'`OutputXYZTrajectoryPos.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputXYZTrajectoryVel.o `test -f 'OutputXYZTrajectoryVel.cpp' || echo 
'./'`OutputXYZTrajectoryVel.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
TopologyFactoryDetails.o `test -f 'TopologyFactoryDetails.cpp' || echo 
'./'`TopologyFactoryDetails.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
buildTopology.o `test -f 'buildTopology.cpp' || echo './'`buildTopology.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
inputValueDefinitions.o `test -f 'inputValueDefinitions.cpp' || echo 
'./'`inputValueDefinitions.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
parseCommandLine.o `test -f 'parseCommandLine.cpp' || echo 
'./'`parseCommandLine.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
rm -f libfrontend.a
ar cru libfrontend.a HelpTextFactory.o ForceFactoryDetails.o  InputPosVel.o 
InputPosVelType.o  IntegratorFactoryDetails.o Output.o  OutputCache.o 
OutputCollection.o  OutputDCDTrajectory.o OutputDiffusion.o  OutputDihedrals.o 
OutputEnergies.o  OutputFactoryDetails.o OutputFile.o  OutputFinalXYZBinPos.o 
OutputFinalXYZBinVel.o  OutputFinalXYZPos.o OutputFinalPDBPos.o  
OutputFinalXYZVel.o OutputMomentum.o  OutputPaulTrap.o OutputPDBFramePos.o  
OutputScreen.o OutputTemperatures.o  OutputXYZTrajectoryForce.o  
OutputXYZTrajectoryPos.o  OutputXYZTrajectoryVel.o  TopologyFactoryDetails.o 
buildTopology.o  inputValueDefinitions.o parseCommandLine.o  
ranlib libfrontend.a
Making all in factories
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend 
-I../../framework/factories   -I/usr/local/include  -O2 -pipe 
-fno-strict-aliasing -L/usr/local/lib -c -o registerForceExemplars.o `test -f 
'registerForceExemplars.cpp' || echo './'`registerForceExemplars.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend 
-I../../framework/factories   -I/usr/local/include  -O2 -pipe 
-fno-strict-aliasing -L/usr/local/lib -c -o registerForceExemplarsBonded.o 
`test -f 'registerForceExemplarsBonded.cpp' || echo 
'./'`registerForceExemplarsBonded.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
In file included from registerForceExemplarsBonded.cpp:8:
./../framework/forces/ImproperSystemForce.h:72:7: error: use of undeclared 
identifier 'calcTorsion'
      calcTorsion(boundary,topo->impropers[i], positions, forces, 
(*energies)[ScalarStructure::IMPROPER],energies);
      ^
      this->
registerForceExemplarsBonded.cpp:16:40: note: in instantiation of member 
function 
'ProtoMol::ImproperSystemForce<ProtoMol::PeriodicBoundaryConditions>::evaluate' 
requested here
    ForceFactory::registerExemplar(new 
ImproperSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
In file included from registerForceExemplarsBonded.cpp:8:
./../framework/forces/ImproperSystemForce.h:93:4: error: use of undeclared 
identifier 'calcTorsion'
          calcTorsion(boundary, topo->impropers[j], positions, forces, 
(*energies)[ScalarStructure::IMPROPER],energies);
          ^
          this->
registerForceExemplarsBonded.cpp:16:40: note: in instantiation of member 
function 
'ProtoMol::ImproperSystemForce<ProtoMol::PeriodicBoundaryConditions>::parallelEvaluate'
 requested here
    ForceFactory::registerExemplar(new 
ImproperSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
In file included from registerForceExemplarsBonded.cpp:9:
./../framework/forces/DihedralSystemForce.h:75:7: error: use of undeclared 
identifier 'calcTorsion'
      calcTorsion(boundary,topo->dihedrals[i], positions, 
forces,(*energies)[ScalarStructure::DIHEDRAL],energies);
      ^
      this->
registerForceExemplarsBonded.cpp:17:40: note: in instantiation of member 
function 
'ProtoMol::DihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::evaluate' 
requested here
    ForceFactory::registerExemplar(new 
DihedralSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
In file included from registerForceExemplarsBonded.cpp:9:
./../framework/forces/DihedralSystemForce.h:96:4: error: use of undeclared 
identifier 'calcTorsion'
          calcTorsion(boundary, topo->dihedrals[j], positions, forces, 
(*energies)[ScalarStructure::DIHEDRAL],energies);
          ^
          this->
registerForceExemplarsBonded.cpp:17:40: note: in instantiation of member 
function 
'ProtoMol::DihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::parallelEvaluate'
 requested here
    ForceFactory::registerExemplar(new 
DihedralSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
In file included from registerForceExemplarsBonded.cpp:10:
./../framework/forces/HarmDihedralSystemForce.h:122:6: error: use of undeclared 
identifier 'calcTorsion'
            calcTorsion(boundary,topo->dihedrals[i], positions, 
forces,(*energies)[ScalarStructure::DIHEDRAL],energies);
            ^
            this->
registerForceExemplarsBonded.cpp:18:40: note: in instantiation of member 
function 
'ProtoMol::HarmDihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::evaluate'
 requested here
    ForceFactory::registerExemplar(new 
HarmDihedralSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
In file included from registerForceExemplarsBonded.cpp:10:
./../framework/forces/HarmDihedralSystemForce.h:152:6: error: use of undeclared 
identifier 'calcTorsion'
            calcTorsion(boundary,topo->dihedrals[j], positions, 
forces,(*energies)[ScalarStructure::DIHEDRAL],energies);
            ^
            this->
registerForceExemplarsBonded.cpp:18:40: note: in instantiation of member 
function 
'ProtoMol::HarmDihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::parallelEvaluate'
 requested here
    ForceFactory::registerExemplar(new 
HarmDihedralSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
6 errors generated.
*** Error code 1

Stop.
make[4]: stopped in 
/wrkdirs/usr/ports/biology/protomol/work/protomol/framework/factories
*** Error code 1

Stop.
make[3]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol/framework
*** Error code 1

Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/protomol
===>  Cleaning for protomol-2.0.3_9
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