You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     h2+fbsdpo...@fsfe.org
Last committer: da...@freebsd.org
Ident:          $FreeBSD: head/biology/ugene/Makefile 347340 2014-03-07 
07:39:20Z danfe $
Log URL:        
http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-07-06_05h25m36s/logs/ugene-1.13.1.log
Build URL:      
http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-07-06_05h25m36s
Log:

====>> Building biology/ugene
build started at Sun Jul  6 21:17:22 UTC 2014
port directory: /usr/ports/biology/ugene
building for: FreeBSD head-amd64-default-job-16 11.0-CURRENT FreeBSD 
11.0-CURRENT r268131 amd64
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:      $FreeBSD: head/biology/ugene/Makefile 347340 2014-03-07 
07:39:20Z danfe $
Poudriere version: 3.1-pre
Host OSVERSION: 1100022
Jail OSVERSION: 1100026




!!! Jail is newer than host. (Jail: 1100026, Host: 1100022) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
OSVERSION=1100026
UNAME_v=FreeBSD 11.0-CURRENT r268131
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/build/head-amd64-default/ref
PKG_EXT=txz
tpid=18447
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=ugene-1.13.1
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
OLDPWD=/usr/local/poudriere/data/build/head-amd64-default/ref/poudriere/rdeps
PWD=/usr/local/poudriere/data/build/head-amd64-default/ref/poudriere/pool
MASTERNAME=head-amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for ugene-1.13.1:
     DOCS=on: Install official UGENE documentation (PDF)
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--with-qt-includes=/usr/local/include/qt4  
--with-qt-libraries=/usr/local/lib/qt4  
--with-extra-includes=/usr/local/include  --with-extra-libs=/usr/local/lib
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  
HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" QTDIR="/usr/local" 
QMAKE="/usr/local/bin/qmake-qt4"  MOC="/usr/local/bin/moc-qt4" 
RCC="/usr/local/bin/rcc" UIC="/usr/local/bin/uic-qt4"  
QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-$(ccver="$(c++ --version)"; 
case "$ccver" in *clang*) echo clang ;; *) echo g++ ;; esac)" 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  
HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  
HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  
HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" NO_PIE=yes 
SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  
LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing"  CPP="cpp" 
CPPFLAGS=""  LDFLAGS="" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe 
-fno-strict-aliasing -std=c++11"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 555"  
BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  
BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  
BSD_INSTALL_DATA="install  -o root -g wheel -m 444"  BSD_INSTALL_MAN="install  
-o root -g wheel -m 444"
--End MAKE_ENV--

--PLIST_SUB--
NOX64="@comment
"
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
PORTDATA=""
LIB32DIR=lib
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
DOCSDIR="share/ugene/manuals"
EXAMPLESDIR="share/examples/ugene"
DATADIR="share/ugene"
WWWDIR="www/ugene"
ETCDIR="etc/ugene"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/ugene
DOCSDIR=/usr/local/share/ugene/manuals
EXAMPLESDIR=/usr/local/share/examples/ugene
WWWDIR=/usr/local/www/ugene
ETCDIR=/usr/local/etc/ugene
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
# clean-restricted ran via poudriere.conf NO_RESTRICTED
#NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===>  Cleaning for ugene-1.13.1
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ugene-1.13.1 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.2.7_3.txz
Installing pkg-1.2.7_3... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of ugene-1.13.1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.13.1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.13.1 for building
=> SHA256 Checksum OK for ugene/ugene-1.13.1.tar.gz.
=> SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.13.1 for building
===>  Extracting for ugene-1.13.1
=> SHA256 Checksum OK for ugene/ugene-1.13.1.tar.gz.
=> SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf.
/bin/cp -p /portdistfiles/ugene/*.pdf 
/wrkdirs/usr/ports/biology/ugene/work/ugene-1.13.1/data/manuals
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for ugene-1.13.1
===>  Applying FreeBSD patches for ugene-1.13.1
===========================================================================
=======================<phase: build-depends  >============================
===>   ugene-1.13.1 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - 
not found
===>    Verifying install for /usr/local/libdata/pkgconfig/glproto.pc in 
/usr/ports/x11/glproto
===>   Installing existing package /packages/All/glproto-1.4.17.txz
Installing glproto-1.4.17... done
===>   Returning to build of ugene-1.13.1
===>   ugene-1.13.1 depends on file: /usr/local/libdata/pkgconfig/dri2proto.pc 
- not found
===>    Verifying install for /usr/local/libdata/pkgconfig/dri2proto.pc in 
/usr/ports/x11/dri2proto
===>   Installing existing package /packages/All/dri2proto-2.8.txz
Installing dri2proto-2.8... done
===>   Returning to build of ugene-1.13.1
===>   ugene-1.13.1 depends on file: /usr/local/libdata/pkgconfig/xtst.pc - not 
found
===>    Verifying install for /usr/local/libdata/pkgconfig/xtst.pc in 
/usr/ports/x11/libXtst
===>   Installing existing package /packages/All/libXtst-1.2.2_2.txz
Installing libXtst-1.2.2_2...Installing inputproto-2.3... done
Installing libX11-1.6.2_2,1...Installing kbproto-1.0.6... done
Installing libXau-1.0.8_2...Installing xproto-7.0.25... done
 done
Installing libXdmcp-1.1.1_2... done
Installing libxcb-1.10_2...Installing libpthread-stubs-0.3_5... done
Installing libxml2-2.9.1_1... done
 done
 done
Installing libXext-1.3.2_2,1...Installing xextproto-7.3.0... done
 done
Installing libXi-1.7.2_2,1...Installing libXfixes-5.0.1_2...Installing 
fixesproto-5.0... done
 done
 done
Installing recordproto-1.14.2... done
 done
===>   Returning to build of ugene-1.13.1
===>   ugene-1.13.1 depends on file: /usr/local/lib/qt4/libQtGui.so - not found
===>    Verifying install for /usr/local/lib/qt4/libQtGui.so in 
/usr/ports/x11-toolkits/qt4-gui
===>   Installing existing package /packages/All/qt4-gui-4.8.6.txz
Installing qt4-gui-4.8.6...Installing encodings-1.0.4_1,1...Installing 
font-util-1.3.0_1... done
 done
Installing fontconfig-2.11.0_3,1...Installing expat-2.1.0_1... done
Installing freetype2-2.5.3_2... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 3 dirs
/usr/local/lib/X11/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs
/usr/local/lib/X11/fonts/encodings/large: caching, new cache contents: 0 fonts, 
0 dirs
/usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs
<snip>
In file included from /usr/local/include/qt4/QtCore/QTime:1:
In file included from /usr/local/include/qt4/QtCore/qdatetime.h:47:
In file included from /usr/local/include/qt4/QtCore/qsharedpointer.h:50:
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:435:17: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
                register int tmp = o->strongref;
                ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:822:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = static_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:834:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = dynamic_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:848:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = const_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:868:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = qobject_cast<X *>(src.data());
    ^~~~~~~~~
6 warnings generated.
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.13.1 -DUGENE_VER_MAJOR=1 
-DUGENE_VER_MINOR=13 -DUGENE_VER_PATCH=1 -DUGENE_X86_64 
-DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DOPENCL_SUPPORT -DQT_DLL 
-DQT_FATAL_ASSERT -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB 
-DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED 
-I/usr/local/share/qt4/mkspecs/freebsd-clang -I. 
-I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork 
-I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml 
-I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit 
-I/usr/local/include/qt4 -Isrc -I_tmp -I../include -I../corelibs/U2Private/src 
-I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include 
src/TestStarter.h -o _tmp/moc/release/moc_TestStarter.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -Wall 
-W -DUGENE_VERSION=1.13.1 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=13 
-DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" 
-DOPENCL_SUPPORT -DQT_DLL -DQT_FATAL_ASSERT -DNDEBUG -DQT_NO_DEBUG 
-DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB 
-DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. 
-I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork 
-I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml 
-I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit 
-I/usr/local/include/qt4 -Isrc -I_tmp -I../include -I../corelibs/U2Private/src 
-I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o 
_tmp/obj/release/moc_TestStarter.o _tmp/moc/release/moc_TestStarter.cpp
In file included from _tmp/moc/release/moc_TestStarter.cpp:9:
In file included from _tmp/moc/release/../../../src/TestStarter.h:25:
In file included from ../include/U2Core/AppContext.h:1:
In file included from 
../include/U2Core/../../corelibs/U2Core/src/globals/AppContext.h:25:
In file included from 
../include/U2Core/../../corelibs/U2Core/src/globals/global.h:28:
In file included from /usr/local/include/qt4/QtCore/QVariantMap:1:
In file included from /usr/local/include/qt4/QtCore/qvariant.h:48:
/usr/local/include/qt4/QtCore/qmetatype.h:256:5: warning: 'register' storage 
class specifier is deprecated [-Wdeprecated-register]
    register int id = qMetaTypeId<T>();
    ^~~~~~~~~
In file included from _tmp/moc/release/moc_TestStarter.cpp:9:
In file included from _tmp/moc/release/../../../src/TestStarter.h:26:
In file included from ../include/U2Core/Task.h:1:
In file included from 
../include/U2Core/../../corelibs/U2Core/src/globals/Task.h:26:
In file included from ../include/U2Core/Log.h:1:
In file included from 
../include/U2Core/../../corelibs/U2Core/src/globals/Log.h:29:
In file included from /usr/local/include/qt4/QtCore/QTime:1:
In file included from /usr/local/include/qt4/QtCore/qdatetime.h:47:
In file included from /usr/local/include/qt4/QtCore/qsharedpointer.h:50:
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:435:17: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
                register int tmp = o->strongref;
                ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:822:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = static_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:834:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = dynamic_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:848:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = const_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:868:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = qobject_cast<X *>(src.data());
    ^~~~~~~~~
6 warnings generated.
c++ -Wl,-O1 -lexecinfo -pthread -Wl,-rpath,/usr/local/lib/qt4 -o 
../_release/ugenecl _tmp/obj/release/DumpHelpTask.o  
_tmp/obj/release/DumpLicenseTask.o  _tmp/obj/release/DumpVersionTask.o  
_tmp/obj/release/ForeverTask.o  _tmp/obj/release/Main.o  
_tmp/obj/release/TaskStatusBar.o  _tmp/obj/release/TestStarter.o  
_tmp/obj/release/moc_DumpHelpTask.o  _tmp/obj/release/moc_DumpLicenseTask.o  
_tmp/obj/release/moc_DumpVersionTask.o  _tmp/obj/release/moc_ForeverTask.o  
_tmp/obj/release/moc_TaskStatusBar.o  _tmp/obj/release/moc_TestStarter.o    
-L/usr/local/lib/qt4 -L/usr/local/lib -L../_release -lU2Core -lU2Algorithm 
-lU2Formats -lU2Gui -lU2Test -lU2Remote -lU2Lang -lU2Private -lugenedb 
-lQtWebKit -lQtScript -L/usr/local/lib/qt4 -L/usr/local/lib -lQtXml -lQtGui 
-lQtNetwork -lQtCore
cd src/ugenem/ && /usr/bin/make -f Makefile release
/usr/bin/make -f Makefile.Release
/usr/local/bin/uic-qt4 src/ui/SendReportDialog.ui -o 
_tmp/ui/ui_SendReportDialog.h
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -Wall 
-W -DUGENE_VERSION=1.13.1 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=13 
-DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" 
-DQT_DLL -DQT_FATAL_ASSERT -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_XML_LIB 
-DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED 
-I/usr/local/share/qt4/mkspecs/freebsd-clang -I. 
-I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork 
-I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml 
-I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp 
-I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o 
_tmp/obj/release/main.o src/main.cpp
In file included from src/main.cpp:23:
In file included from /usr/local/include/qt4/QtGui/QMessageBox:1:
In file included from /usr/local/include/qt4/QtGui/qmessagebox.h:45:
In file included from /usr/local/include/qt4/QtGui/qdialog.h:45:
In file included from /usr/local/include/qt4/QtGui/qwidget.h:50:
In file included from /usr/local/include/qt4/QtGui/qpalette.h:47:
In file included from /usr/local/include/qt4/QtGui/qbrush.h:53:
In file included from /usr/local/include/qt4/QtGui/qpixmap.h:49:
In file included from /usr/local/include/qt4/QtCore/qsharedpointer.h:50:
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:435:17: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
                register int tmp = o->strongref;
                ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:822:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = static_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:834:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = dynamic_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:848:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = const_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:868:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = qobject_cast<X *>(src.data());
    ^~~~~~~~~
In file included from src/main.cpp:25:
In file included from /usr/local/include/qt4/QtCore/QTextStream:1:
In file included from /usr/local/include/qt4/QtCore/qtextstream.h:48:
In file included from /usr/local/include/qt4/QtCore/qlocale.h:45:
In file included from /usr/local/include/qt4/QtCore/qvariant.h:48:
/usr/local/include/qt4/QtCore/qmetatype.h:256:5: warning: 'register' storage 
class specifier is deprecated [-Wdeprecated-register]
    register int id = qMetaTypeId<T>();
    ^~~~~~~~~
6 warnings generated.
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -Wall 
-W -DUGENE_VERSION=1.13.1 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=13 
-DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" 
-DQT_DLL -DQT_FATAL_ASSERT -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_XML_LIB 
-DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED 
-I/usr/local/share/qt4/mkspecs/freebsd-clang -I. 
-I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork 
-I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml 
-I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp 
-I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o 
_tmp/obj/release/SendReportDialog.o src/SendReportDialog.cpp
In file included from src/SendReportDialog.cpp:22:
In file included from src/SendReportDialog.h:26:
In file included from _tmp/ui/ui_SendReportDialog.h:12:
In file included from /usr/local/include/qt4/QtCore/QVariant:1:
In file included from /usr/local/include/qt4/QtCore/qvariant.h:48:
/usr/local/include/qt4/QtCore/qmetatype.h:256:5: warning: 'register' storage 
class specifier is deprecated [-Wdeprecated-register]
    register int id = qMetaTypeId<T>();
    ^~~~~~~~~
In file included from src/SendReportDialog.cpp:22:
In file included from src/SendReportDialog.h:26:
In file included from _tmp/ui/ui_SendReportDialog.h:13:
In file included from /usr/local/include/qt4/QtGui/QAction:1:
In file included from /usr/local/include/qt4/QtGui/qaction.h:47:
In file included from /usr/local/include/qt4/QtGui/qwidget.h:50:
In file included from /usr/local/include/qt4/QtGui/qpalette.h:47:
In file included from /usr/local/include/qt4/QtGui/qbrush.h:53:
In file included from /usr/local/include/qt4/QtGui/qpixmap.h:49:
In file included from /usr/local/include/qt4/QtCore/qsharedpointer.h:50:
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:435:17: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
                register int tmp = o->strongref;
                ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:822:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = static_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:834:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = dynamic_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:848:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = const_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:868:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = qobject_cast<X *>(src.data());
    ^~~~~~~~~
6 warnings generated.
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.13.1 -DUGENE_VER_MAJOR=1 
-DUGENE_VER_MINOR=13 -DUGENE_VER_PATCH=1 -DUGENE_X86_64 
-DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DQT_FATAL_ASSERT -DNDEBUG 
-DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB 
-DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. 
-I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork 
-I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml 
-I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp 
-I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include 
src/SendReportDialog.h -o _tmp/moc/release/moc_SendReportDialog.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -Wall 
-W -DUGENE_VERSION=1.13.1 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=13 
-DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" 
-DQT_DLL -DQT_FATAL_ASSERT -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_XML_LIB 
-DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED 
-I/usr/local/share/qt4/mkspecs/freebsd-clang -I. 
-I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork 
-I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml 
-I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp 
-I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o 
_tmp/obj/release/moc_SendReportDialog.o 
_tmp/moc/release/moc_SendReportDialog.cpp
In file included from _tmp/moc/release/moc_SendReportDialog.cpp:9:
In file included from _tmp/moc/release/../../../src/SendReportDialog.h:26:
In file included from _tmp/ui/ui_SendReportDialog.h:12:
In file included from /usr/local/include/qt4/QtCore/QVariant:1:
In file included from /usr/local/include/qt4/QtCore/qvariant.h:48:
/usr/local/include/qt4/QtCore/qmetatype.h:256:5: warning: 'register' storage 
class specifier is deprecated [-Wdeprecated-register]
    register int id = qMetaTypeId<T>();
    ^~~~~~~~~
In file included from _tmp/moc/release/moc_SendReportDialog.cpp:9:
In file included from _tmp/moc/release/../../../src/SendReportDialog.h:26:
In file included from _tmp/ui/ui_SendReportDialog.h:13:
In file included from /usr/local/include/qt4/QtGui/QAction:1:
In file included from /usr/local/include/qt4/QtGui/qaction.h:47:
In file included from /usr/local/include/qt4/QtGui/qwidget.h:50:
In file included from /usr/local/include/qt4/QtGui/qpalette.h:47:
In file included from /usr/local/include/qt4/QtGui/qbrush.h:53:
In file included from /usr/local/include/qt4/QtGui/qpixmap.h:49:
In file included from /usr/local/include/qt4/QtCore/qsharedpointer.h:50:
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:435:17: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
                register int tmp = o->strongref;
                ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:822:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = static_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:834:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = dynamic_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:848:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = const_cast<X *>(src.data()); // if you get an error in 
this line, the cast is invalid
    ^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:868:5: warning: 'register' 
storage class specifier is deprecated [-Wdeprecated-register]
    register X *ptr = qobject_cast<X *>(src.data());
    ^~~~~~~~~
6 warnings generated.
/usr/local/bin/rcc -name ugenem ugenem.qrc -o _tmp/rcc/qrc_ugenem.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -Wall 
-W -DUGENE_VERSION=1.13.1 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=13 
-DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" 
-DQT_DLL -DQT_FATAL_ASSERT -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_XML_LIB 
-DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED 
-I/usr/local/share/qt4/mkspecs/freebsd-clang -I. 
-I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork 
-I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml 
-I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp 
-I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o 
_tmp/obj/release/qrc_ugenem.o _tmp/rcc/qrc_ugenem.cpp
c++ -Wl,-O1 -pthread -Wl,-rpath,/usr/local/lib/qt4 -o ../_release/ugenem 
_tmp/obj/release/main.o  _tmp/obj/release/SendReportDialog.o  
_tmp/obj/release/moc_SendReportDialog.o  _tmp/obj/release/qrc_ugenem.o    
-L/usr/local/lib/qt4 -L/usr/local/lib -lX11 -lQtWebKit -lQtXml 
-L/usr/local/lib/qt4 -L/usr/local/lib -lQtGui -lQtNetwork -lQtCore
cd src/plugins_3rdparty/ball/ && /usr/bin/make -f Makefile release
/usr/bin/make -f Makefile.Release
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -w 
-fPIC -DUGENE_VERSION=1.13.1 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=13 
-DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" 
-DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB 
-DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED 
-I/usr/local/share/qt4/mkspecs/freebsd-clang -I. 
-I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork 
-I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml 
-I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript 
-I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp 
-I../../include -Isrc/include -I_tmp/moc/release -I/usr/local/include/qt4 
-I/usr/local/include -o _tmp/obj/release/BallPlugin.o src/BallPlugin.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -w 
-fPIC -DUGENE_VERSION=1.13.1 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=13 
-DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" 
-DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB 
-DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED 
-I/usr/local/share/qt4/mkspecs/freebsd-clang -I. 
-I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork 
-I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml 
-I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript 
-I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp 
-I../../include -Isrc/include -I_tmp/moc/release -I/usr/local/include/qt4 
-I/usr/local/include -o _tmp/obj/release/SES.o src/SES.cpp
In file included from src/SES.cpp:24:
In file included from src/include/BALL/STRUCTURE/triangulatedSES.h:11:
In file included from src/include/BALL/STRUCTURE/solventExcludedSurface.h:15:
In file included from src/include/BALL/STRUCTURE/SESFace.h:19:
In file included from src/include/BALL/STRUCTURE/RSFace.h:19:
In file included from src/include/BALL/DATATYPE/hashSet.h:15:
In file included from src/include/BALL/COMMON/hash.h:15:
src/include/BALL/DATATYPE/string.h:904:24: error: friend declaration specifying 
a default argument must be a definition
                friend std::istream& getline(std::istream& s,  String& string,  
char delimiter = '\n')
                                     ^
1 error generated.
*** Error code 1

Stop.
make[3]: stopped in 
/wrkdirs/usr/ports/biology/ugene/work/ugene-1.13.1/src/plugins_3rdparty/ball
*** Error code 1

Stop.
make[2]: stopped in 
/wrkdirs/usr/ports/biology/ugene/work/ugene-1.13.1/src/plugins_3rdparty/ball
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.13.1
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ugene
===>  Cleaning for ugene-1.13.1
_______________________________________________
freebsd-pkg-fallout@freebsd.org mailing list
https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout
To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"

Reply via email to