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build.

Maintainer:     po...@freebsd.org
Last committer: m...@freebsd.org
Ident:          $FreeBSD: head/biology/lagan/Makefile 324191 2013-08-03 
13:44:00Z mat $
Log URL:        
http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2013-09-19_01h04m14s/logs/lagan-2.0.log
Build URL:      
http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2013-09-19_01h04m14s
Log:

====>> Building biology/lagan
build started at Thu Sep 19 07:59:07 UTC 2013
port directory: /usr/ports/biology/lagan
building for: FreeBSD head-amd64-default-job-14 10.0-CURRENT FreeBSD 
10.0-CURRENT amd64
maintained by: po...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/lagan/Makefile 324191 2013-08-03 
13:44:00Z mat $
Poudriere version: 3.1-pre

---Begin Environment---
OSVERSION=1000055
UNAME_v=FreeBSD 10.0-CURRENT
UNAME_r=10.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/head-amd64-default/ref
PKG_EXT=txz
tpid=5767
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
NBPARALLEL=24
PKGNG=1
PKGNAME=lagan-2.0
PKG_DELETE=/usr/local/sbin/pkg delete -y -f
PKG_ADD=/usr/local/sbin/pkg add
PWD=/root
MASTERNAME=head-amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
SKIPSANITY=0
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local 
 LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing"  CPP="cpp" 
CPPFLAGS=""  LDFLAGS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing"  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 
555"  BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  
BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  
BSD_INSTALL_DATA="install  -o root -g wheel -m 444"  BSD_INSTALL_MAN="install  
-o root -g wheel -m 444"
--End MAKE_ENV--

--SUB_LIST--
LAGAN_DIR="/usr/local/lagan"
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/lagan
DOCSDIR=/usr/local/share/doc/lagan
EXAMPLESDIR=/usr/local/share/examples/lagan
WWWDIR=/usr/local/www/lagan
ETCDIR=/usr/local/etc/lagan
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=yes
---End make.conf---
===>  Cleaning for lagan-2.0
=======================<phase: check-config   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   lagan-2.0 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.1.4_2.txz
Installing pkg-1.1.4_2... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of lagan-2.0
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by lagan-2.0 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by lagan-2.0 for building
=> SHA256 Checksum OK for lagan20.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by lagan-2.0 for building
===>  Extracting for lagan-2.0
=> SHA256 Checksum OK for lagan20.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for lagan-2.0
===>  Applying FreeBSD patches for lagan-2.0
===========================================================================
=======================<phase: build-depends  >============================
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for lagan-2.0
===========================================================================
=======================<phase: build          >============================
===>  Building for lagan-2.0
(cd src; /usr/bin/make)
cc -O2 -pipe -fno-strict-aliasing  -o ../anchors anchors.c skiplist.c
skiplist.c:12:37: warning: format specifies type 'unsigned int' but the 
argument has type 'void *' [-Wformat]
  printf("  %d   %x\n", tbp->index, tbp->myelem);
                 ~~                 ^~~~~~~~~~~
1 warning generated.
cc -O2 -pipe -fno-strict-aliasing  -o ../chaos fchaos.c thrtrie.c skiplist.c 
global.c translate.c filebuffer.c -lm -DCHAOS__FLAG
fchaos.c:357:59: warning: data argument not used by format string 
[-Wformat-extra-args]
        fprintf(stderr, "WARNING %c converted to N\n", currchar, alpha);
                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~            ^
1 warning generated.
In file included from thrtrie.c:13:
./mempage.c:48:1: warning: control reaches end of non-void function 
[-Wreturn-type]
}
^
1 warning generated.
skiplist.c:12:37: warning: format specifies type 'unsigned int' but the 
argument has type 'void *' [-Wformat]
  printf("  %d   %x\n", tbp->index, tbp->myelem);
                 ~~                 ^~~~~~~~~~~
1 warning generated.
global.c:172:1: warning: control reaches end of non-void function 
[-Wreturn-type]
}
^
1 warning generated.
filebuffer.c:123:34: warning: implicit declaration of function 'toupper' is 
invalid in C99 [-Wimplicit-function-declaration]
    temp[i] = (strchr (alphabet, toupper ((char) i)) != 0) ?
                                 ^
1 warning generated.
/tmp/fchaos-Os34Rh.o: In function `connectToPrev':
fchaos.c:(.text+0x14ca): undefined reference to `findPrev'
cc: error: linker command failed with exit code 1 (use -v to see invocation)
*** Error code 1

Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/lagan/work/lagan20/src
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/lagan/work/lagan20
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/lagan
===>  Cleaning for lagan-2.0
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