You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sangw...@gmail.com
Last committer: zeis...@freebsd.org
Ident:          $FreeBSD: head/biology/protomol/Makefile 351411 2014-04-16 
18:28:47Z zeising $
Log URL:        
http://beefy1.isc.freebsd.org/bulk/10i386-default/2014-07-10_19h47m13s/logs/protomol-2.0.3_9.log
Build URL:      
http://beefy1.isc.freebsd.org/bulk/10i386-default/2014-07-10_19h47m13s
Log:

====>> Building biology/protomol
build started at Fri Jul 11 02:08:53 UTC 2014
port directory: /usr/ports/biology/protomol
building for: FreeBSD 10i386-default-job-11 10.0-RELEASE-p3 FreeBSD 
10.0-RELEASE-p3 i386
maintained by: sangw...@gmail.com
Makefile ident:      $FreeBSD: head/biology/protomol/Makefile 351411 2014-04-16 
18:28:47Z zeising $
Poudriere version: 3.1-pre
Host OSVERSION: 1100022
Jail OSVERSION: 1000510

---Begin Environment---
UNAME_m=i386
UNAME_p=i386
OSVERSION=1000510
UNAME_v=FreeBSD 10.0-RELEASE-p3
UNAME_r=10.0-RELEASE-p3
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/build/10i386-default/ref
PKG_EXT=txz
tpid=28320
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=protomol-2.0.3_9
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
OLDPWD=/usr/local/poudriere/data/build/10i386-default/ref/poudriere/rdeps
PWD=/usr/local/poudriere/data/build/10i386-default/ref/poudriere/pool
MASTERNAME=10i386-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for protomol-2.0.3_9:
     GLUT=on: OpenGL Utility Toolkit support
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--without-irix_mipspro_mpi --with-glut=yes --x-libraries=/usr/local/lib 
--x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/protomol/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/protomol/work  
HOME=/wrkdirs/usr/ports/biology/protomol/work TMPDIR="/tmp" 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/protomol/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/protomol/work  
HOME=/wrkdirs/usr/ports/biology/protomol/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/protomol/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/protomol/work  
HOME=/wrkdirs/usr/ports/biology/protomol/work TMPDIR="/tmp" 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/protomol/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/protomol/work  
HOME=/wrkdirs/usr/ports/biology/protomol/work TMPDIR="/tmp" NO_PIE=yes 
SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  
LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing"  CPP="cpp" 
CPPFLAGS="-I/usr/local/include"  LDFLAGS="" LIBS=""  CXX="c++" CXXFLAGS="-O2 
-pipe -fno-strict-aliasing -L/usr/local/lib"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 555"  
BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  
BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  
BSD_INSTALL_DATA="install  -o root -g wheel -m 444"  BSD_INSTALL_MAN="install  
-o root -g wheel -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=10.0
PREFIX=%D
LOCALBASE=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
PORTDATA=""
LIB32DIR=lib
DOCSDIR="share/doc/protomol"
EXAMPLESDIR="share/examples/protomol"
DATADIR="share/protomol"
WWWDIR="www/protomol"
ETCDIR="etc/protomol"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/protomol
DOCSDIR=/usr/local/share/doc/protomol
EXAMPLESDIR=/usr/local/share/examples/protomol
WWWDIR=/usr/local/www/protomol
ETCDIR=/usr/local/etc/protomol
--End SUB_LIST--

---Begin make.conf---
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
# clean-restricted via poudriere.conf NO_RESTRICTED
#NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===>  Cleaning for protomol-2.0.3_9
=======================<phase: check-sanity   >============================
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Not staged. See 
http://lists.freebsd.org/pipermail/freebsd-ports-announce/2014-May/000080.html.

It is scheduled to be removed on or after 2014-08-31.

===========================================================================
=======================<phase: pkg-depends    >============================
===>   protomol-2.0.3_9 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.2.7_4.txz
Installing pkg-1.2.7_4... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of protomol-2.0.3_9
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Not staged. See 
http://lists.freebsd.org/pipermail/freebsd-ports-announce/2014-May/000080.html.

It is scheduled to be removed on or after 2014-08-31.

===> Fetching all distfiles required by protomol-2.0.3_9 for building
===========================================================================
=======================<phase: checksum       >============================
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Not staged. See 
http://lists.freebsd.org/pipermail/freebsd-ports-announce/2014-May/000080.html.

It is scheduled to be removed on or after 2014-08-31.

===> Fetching all distfiles required by protomol-2.0.3_9 for building
=> SHA256 Checksum OK for protomol-2.0.3-tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Not staged. See 
http://lists.freebsd.org/pipermail/freebsd-ports-announce/2014-May/000080.html.

It is scheduled to be removed on or after 2014-08-31.

===> Fetching all distfiles required by protomol-2.0.3_9 for building
===>  Extracting for protomol-2.0.3_9
=> SHA256 Checksum OK for protomol-2.0.3-tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for protomol-2.0.3_9
===>  Applying FreeBSD patches for protomol-2.0.3_9
===========================================================================
=======================<phase: build-depends  >============================
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - 
not found
===>    Verifying install for /usr/local/libdata/pkgconfig/xmu.pc in 
/usr/ports/x11-toolkits/libXmu
===>   Installing existing package /packages/All/libXmu-1.1.2_2,1.txz
Installing libXmu-1.1.2_2,1...Installing libX11-1.6.2_2,1...Installing 
kbproto-1.0.6... done
Installing libXau-1.0.8_2...Installing xproto-7.0.25... done
 done
Installing libXdmcp-1.1.1_2... done
Installing libxcb-1.10_2...Installing libpthread-stubs-0.3_5... done
Installing libxml2-2.9.1_1... done
 done
 done
Installing libXext-1.3.2_2,1...Installing xextproto-7.3.0... done
 done
Installing libXt-1.1.4_2,1...Installing libSM-1.2.2_2,1...Installing 
libICE-1.0.8_2,1... done
 done
 done
 done
===>   Returning to build of protomol-2.0.3_9
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xt.pc - 
found
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/sm.pc - 
found
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/ice.pc - 
found
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xext.pc - 
found
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/x11.pc - 
found
===>   protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xi.pc - 
not found
===>    Verifying install for /usr/local/libdata/pkgconfig/xi.pc in 
/usr/ports/x11/libXi
===>   Installing existing package /packages/All/libXi-1.7.2_2,1.txz
Installing libXi-1.7.2_2,1...Installing inputproto-2.3... done
Installing libXfixes-5.0.1_2...Installing fixesproto-5.0... done
 done
 done
===>   Returning to build of protomol-2.0.3_9
<snip>
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierShake.o `test -f 
'ModifierShake.cpp' || echo './'`ModifierShake.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierRattle.o `test -f 
'ModifierRattle.cpp' || echo './'`ModifierRattle.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNPTShake.o `test -f 
'ModifierNPTShake.cpp' || echo './'`ModifierNPTShake.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNPTRattle.o `test -f 
'ModifierNPTRattle.cpp' || echo './'`ModifierNPTRattle.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNVTShake.o `test -f 
'ModifierNVTShake.cpp' || echo './'`ModifierNVTShake.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNVTRattle.o `test -f 
'ModifierNVTRattle.cpp' || echo './'`ModifierNVTRattle.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o PLeapfrogIntegrator.o `test 
-f 'PLeapfrogIntegrator.cpp' || echo './'`PLeapfrogIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o MOLLYIntegrator.o `test -f 
'MOLLYIntegrator.cpp' || echo './'`MOLLYIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o UmbrellaIntegrator.o `test -f 
'UmbrellaIntegrator.cpp' || echo './'`UmbrellaIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o MTSIntegrator.o `test -f 
'MTSIntegrator.cpp' || echo './'`MTSIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o NoseNVTLeapfrogIntegrator.o 
`test -f 'NoseNVTLeapfrogIntegrator.cpp' || echo 
'./'`NoseNVTLeapfrogIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o PaulTrapIntegrator.o `test -f 
'PaulTrapIntegrator.cpp' || echo './'`PaulTrapIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o LangevinImpulseIntegrator.o 
`test -f 'LangevinImpulseIntegrator.cpp' || echo 
'./'`LangevinImpulseIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o StandardIntegrator.o `test -f 
'StandardIntegrator.cpp' || echo './'`StandardIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators   -I/usr/local/include  -O2 
-pipe -fno-strict-aliasing -L/usr/local/lib -c -o STSIntegrator.o `test -f 
'STSIntegrator.cpp' || echo './'`STSIntegrator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
rm -f libintegrators.a
ar cru libintegrators.a ModifierMetaShake.o ModifierMetaRattle.o  
ModifierMetaRattleShake.o NPTVerletIntegrator.o  NVTVerletIntegrator.o 
BSplineMOLLYIntegrator.o  EquilibriumMOLLYIntegrator.o  DihedralHMCIntegrator.o 
DLMCIntegrator.o  ShadowHMCIntegrator.o HMCIntegrator.o  MCIntegrator.o 
ImpulseIntegrator.o  Integrator.o IntegratorDefinition.o  LeapfrogIntegrator.o 
DMDLeapfrogIntegrator.o  BBKIntegrator.o ModifierShake.o  ModifierRattle.o 
ModifierNPTShake.o  ModifierNPTRattle.o ModifierNVTShake.o  ModifierNVTRattle.o 
PLeapfrogIntegrator.o  MOLLYIntegrator.o UmbrellaIntegrator.o  MTSIntegrator.o 
NoseNVTLeapfrogIntegrator.o  PaulTrapIntegrator.o  LangevinImpulseIntegrator.o  
StandardIntegrator.o STSIntegrator.o NPTVerletIntegrator.o  
NVTVerletIntegrator.o 
ranlib libintegrators.a
Making all in frontend
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
HelpTextFactory.o `test -f 'HelpTextFactory.cpp' || echo 
'./'`HelpTextFactory.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
ForceFactoryDetails.o `test -f 'ForceFactoryDetails.cpp' || echo 
'./'`ForceFactoryDetails.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
InputPosVel.o `test -f 'InputPosVel.cpp' || echo './'`InputPosVel.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
InputPosVelType.o `test -f 'InputPosVelType.cpp' || echo 
'./'`InputPosVelType.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
IntegratorFactoryDetails.o `test -f 'IntegratorFactoryDetails.cpp' || echo 
'./'`IntegratorFactoryDetails.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
IntegratorFactoryDetails.cpp:178:13: warning: '&&' within '||' 
[-Wlogical-op-parentheses]
             i > 0 && dynamic_cast<const MTSIntegrator*>(prototype))){
             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
IntegratorFactoryDetails.cpp:178:13: note: place parentheses around the '&&' 
expression to silence this warning
             i > 0 && dynamic_cast<const MTSIntegrator*>(prototype))){
                   ^
             (                                                     )
1 warning generated.
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
Output.o `test -f 'Output.cpp' || echo './'`Output.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputCache.o `test -f 'OutputCache.cpp' || echo './'`OutputCache.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputCollection.o `test -f 'OutputCollection.cpp' || echo 
'./'`OutputCollection.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputDCDTrajectory.o `test -f 'OutputDCDTrajectory.cpp' || echo 
'./'`OutputDCDTrajectory.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputDiffusion.o `test -f 'OutputDiffusion.cpp' || echo 
'./'`OutputDiffusion.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputDihedrals.o `test -f 'OutputDihedrals.cpp' || echo 
'./'`OutputDihedrals.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputEnergies.o `test -f 'OutputEnergies.cpp' || echo './'`OutputEnergies.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFactoryDetails.o `test -f 'OutputFactoryDetails.cpp' || echo 
'./'`OutputFactoryDetails.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFile.o `test -f 'OutputFile.cpp' || echo './'`OutputFile.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFinalXYZBinPos.o `test -f 'OutputFinalXYZBinPos.cpp' || echo 
'./'`OutputFinalXYZBinPos.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFinalXYZBinVel.o `test -f 'OutputFinalXYZBinVel.cpp' || echo 
'./'`OutputFinalXYZBinVel.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFinalXYZPos.o `test -f 'OutputFinalXYZPos.cpp' || echo 
'./'`OutputFinalXYZPos.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFinalPDBPos.o `test -f 'OutputFinalPDBPos.cpp' || echo 
'./'`OutputFinalPDBPos.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputFinalXYZVel.o `test -f 'OutputFinalXYZVel.cpp' || echo 
'./'`OutputFinalXYZVel.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputMomentum.o `test -f 'OutputMomentum.cpp' || echo './'`OutputMomentum.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputPaulTrap.o `test -f 'OutputPaulTrap.cpp' || echo './'`OutputPaulTrap.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputPDBFramePos.o `test -f 'OutputPDBFramePos.cpp' || echo 
'./'`OutputPDBFramePos.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputScreen.o `test -f 'OutputScreen.cpp' || echo './'`OutputScreen.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputTemperatures.o `test -f 'OutputTemperatures.cpp' || echo 
'./'`OutputTemperatures.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputXYZTrajectoryForce.o `test -f 'OutputXYZTrajectoryForce.cpp' || echo 
'./'`OutputXYZTrajectoryForce.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputXYZTrajectoryPos.o `test -f 'OutputXYZTrajectoryPos.cpp' || echo 
'./'`OutputXYZTrajectoryPos.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
OutputXYZTrajectoryVel.o `test -f 'OutputXYZTrajectoryVel.cpp' || echo 
'./'`OutputXYZTrajectoryVel.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
TopologyFactoryDetails.o `test -f 'TopologyFactoryDetails.cpp' || echo 
'./'`TopologyFactoryDetails.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
buildTopology.o `test -f 'buildTopology.cpp' || echo './'`buildTopology.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
inputValueDefinitions.o `test -f 'inputValueDefinitions.cpp' || echo 
'./'`inputValueDefinitions.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend  
 -I/usr/local/include  -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o 
parseCommandLine.o `test -f 'parseCommandLine.cpp' || echo 
'./'`parseCommandLine.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
rm -f libfrontend.a
ar cru libfrontend.a HelpTextFactory.o ForceFactoryDetails.o  InputPosVel.o 
InputPosVelType.o  IntegratorFactoryDetails.o Output.o  OutputCache.o 
OutputCollection.o  OutputDCDTrajectory.o OutputDiffusion.o  OutputDihedrals.o 
OutputEnergies.o  OutputFactoryDetails.o OutputFile.o  OutputFinalXYZBinPos.o 
OutputFinalXYZBinVel.o  OutputFinalXYZPos.o OutputFinalPDBPos.o  
OutputFinalXYZVel.o OutputMomentum.o  OutputPaulTrap.o OutputPDBFramePos.o  
OutputScreen.o OutputTemperatures.o  OutputXYZTrajectoryForce.o  
OutputXYZTrajectoryPos.o  OutputXYZTrajectoryVel.o  TopologyFactoryDetails.o 
buildTopology.o  inputValueDefinitions.o parseCommandLine.o  
ranlib libfrontend.a
Making all in factories
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend 
-I../../framework/factories   -I/usr/local/include  -O2 -pipe 
-fno-strict-aliasing -L/usr/local/lib -c -o registerForceExemplars.o `test -f 
'registerForceExemplars.cpp' || echo './'`registerForceExemplars.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io 
-I../../framework/parallel -I../../framework/topology -I../../framework/forces 
-I../../framework/imd -I../../framework/integrators -I../../framework/frontend 
-I../../framework/factories   -I/usr/local/include  -O2 -pipe 
-fno-strict-aliasing -L/usr/local/lib -c -o registerForceExemplarsBonded.o 
`test -f 'registerForceExemplarsBonded.cpp' || echo 
'./'`registerForceExemplarsBonded.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib'
In file included from registerForceExemplarsBonded.cpp:8:
./../framework/forces/ImproperSystemForce.h:72:7: error: use of undeclared 
identifier 'calcTorsion'
      calcTorsion(boundary,topo->impropers[i], positions, forces, 
(*energies)[ScalarStructure::IMPROPER],energies);
      ^
      this->
registerForceExemplarsBonded.cpp:16:40: note: in instantiation of member 
function 
'ProtoMol::ImproperSystemForce<ProtoMol::PeriodicBoundaryConditions>::evaluate' 
requested here
    ForceFactory::registerExemplar(new 
ImproperSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
In file included from registerForceExemplarsBonded.cpp:8:
./../framework/forces/ImproperSystemForce.h:93:4: error: use of undeclared 
identifier 'calcTorsion'
          calcTorsion(boundary, topo->impropers[j], positions, forces, 
(*energies)[ScalarStructure::IMPROPER],energies);
          ^
          this->
registerForceExemplarsBonded.cpp:16:40: note: in instantiation of member 
function 
'ProtoMol::ImproperSystemForce<ProtoMol::PeriodicBoundaryConditions>::parallelEvaluate'
 requested here
    ForceFactory::registerExemplar(new 
ImproperSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
In file included from registerForceExemplarsBonded.cpp:9:
./../framework/forces/DihedralSystemForce.h:75:7: error: use of undeclared 
identifier 'calcTorsion'
      calcTorsion(boundary,topo->dihedrals[i], positions, 
forces,(*energies)[ScalarStructure::DIHEDRAL],energies);
      ^
      this->
registerForceExemplarsBonded.cpp:17:40: note: in instantiation of member 
function 
'ProtoMol::DihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::evaluate' 
requested here
    ForceFactory::registerExemplar(new 
DihedralSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
In file included from registerForceExemplarsBonded.cpp:9:
./../framework/forces/DihedralSystemForce.h:96:4: error: use of undeclared 
identifier 'calcTorsion'
          calcTorsion(boundary, topo->dihedrals[j], positions, forces, 
(*energies)[ScalarStructure::DIHEDRAL],energies);
          ^
          this->
registerForceExemplarsBonded.cpp:17:40: note: in instantiation of member 
function 
'ProtoMol::DihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::parallelEvaluate'
 requested here
    ForceFactory::registerExemplar(new 
DihedralSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
In file included from registerForceExemplarsBonded.cpp:10:
./../framework/forces/HarmDihedralSystemForce.h:122:6: error: use of undeclared 
identifier 'calcTorsion'
            calcTorsion(boundary,topo->dihedrals[i], positions, 
forces,(*energies)[ScalarStructure::DIHEDRAL],energies);
            ^
            this->
registerForceExemplarsBonded.cpp:18:40: note: in instantiation of member 
function 
'ProtoMol::HarmDihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::evaluate'
 requested here
    ForceFactory::registerExemplar(new 
HarmDihedralSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
In file included from registerForceExemplarsBonded.cpp:10:
./../framework/forces/HarmDihedralSystemForce.h:152:6: error: use of undeclared 
identifier 'calcTorsion'
            calcTorsion(boundary,topo->dihedrals[j], positions, 
forces,(*energies)[ScalarStructure::DIHEDRAL],energies);
            ^
            this->
registerForceExemplarsBonded.cpp:18:40: note: in instantiation of member 
function 
'ProtoMol::HarmDihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::parallelEvaluate'
 requested here
    ForceFactory::registerExemplar(new 
HarmDihedralSystemForce<PeriodicBoundaryConditions>());
                                       ^
./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify 
identifier to find this declaration in dependent base class
    void calcTorsion(const TBoundaryConditions &boundary,
         ^
6 errors generated.
*** Error code 1

Stop.
make[4]: stopped in 
/wrkdirs/usr/ports/biology/protomol/work/protomol/framework/factories
*** Error code 1

Stop.
make[3]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol/framework
*** Error code 1

Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/protomol
===>  Cleaning for protomol-2.0.3_9
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