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Maintainer: [email protected] Last committer: @FreeBSD.org Ident: Makefile ident: Log URL: http://beefy10.nyi.freebsd.org/data/114i386-default/46fc7df8540c/logs/ngs-sdk-2.11.0_2.log Build URL: http://beefy10.nyi.freebsd.org/build.html?mastername=114i386-default&build=46fc7df8540c Log: =>> Building biology/ngs-sdk build started at Tue Apr 13 05:04:31 UTC 2021 port directory: /usr/ports/biology/ngs-sdk package name: ngs-sdk-2.11.0_2 building for: FreeBSD 114i386-default-job-01 11.4-RELEASE-p9 FreeBSD 11.4-RELEASE-p9 i386 maintained by: [email protected] Makefile ident: Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1400003 Jail OSVERSION: 1104001 Job Id: 01 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1104001 UNAME_v=FreeBSD 11.4-RELEASE-p9 UNAME_r=11.4-RELEASE-p9 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/114i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/114i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=114i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/114i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/ngs" EXAMPLESDIR="share/examples/ngs" DATADIR="share/ngs" WWWDIR="www/ngs" ETCDIR="etc/ngs" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ngs DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 ([email protected]:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: i386-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.0 ([email protected]:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: i386-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 ([email protected]:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: i386-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=11.4-RELEASE-p9 OSREL=11.4 OSVERSION=1104001 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License PD accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> ngs-sdk-2.11.0_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.3.txz [114i386-default-job-01] Installing pkg-1.16.3... [114i386-default-job-01] Extracting pkg-1.16.3: .......... done ===> ngs-sdk-2.11.0_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ngs-sdk-2.11.0_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building =========================================================================== =======================<phase: checksum >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building => SHA256 Checksum OK for ncbi-ngs-2.11.0_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building ===> Extracting for ngs-sdk-2.11.0_2 => SHA256 Checksum OK for ncbi-ngs-2.11.0_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for ngs-sdk-2.11.0_2 ===> Applying FreeBSD patches for ngs-sdk-2.11.0_2 from /usr/ports/biology/ngs-sdk/files =========================================================================== =======================<phase: build-depends >============================ ===> ngs-sdk-2.11.0_2 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.txz [114i386-default-job-01] Installing gmake-4.3_2... [114i386-default-job-01] `-- Installing gettext-runtime-0.21... [114i386-default-job-01] | `-- Installing indexinfo-0.3.1... [114i386-default-job-01] | `-- Extracting indexinfo-0.3.1: .... done [114i386-default-job-01] `-- Extracting gettext-runtime-0.21: .......... done [114i386-default-job-01] Extracting gmake-4.3_2: .......... done ===> ngs-sdk-2.11.0_2 depends on package: gmake>=4.3 - found ===> Returning to build of ngs-sdk-2.11.0_2 ===> ngs-sdk-2.11.0_2 depends on package: perl5>=5.32.r0<5.33 - not found ===> Installing existing package /packages/All/perl5-5.32.1_1.txz [114i386-default-job-01] Installing perl5-5.32.1_1... [114i386-default-job-01] Extracting perl5-5.32.1_1: .......... done ===> ngs-sdk-2.11.0_2 depends on package: perl5>=5.32.r0<5.33 - found <snip> clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-python.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_FragmentIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PackageItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/ rel/obj/language/python/py_PileupEventIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadIteratorItf.pic.o /wrkdirs/usr/ports /biology/ngs-sdk/work/ngs-2.11.0/build/ngs-s! dk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StringItf.pic.o gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch' mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-disp.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sd k/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PackageItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StringItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/VTable.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ErrBlock.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/di spatch/ErrorMsg.pic.o gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter' mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386 clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ng s-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StringItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrorMsg.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrBlock.pic.o rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a.2 ln -s libngs-adapt-c++.a.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a.2 rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a ln -s libngs-adapt-c++.a.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++-static.a ln -s libngs-adapt-c++.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++-static.a gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk' rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++ mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++ ( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-c++.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-bind-c++\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++/manifest ) rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp ( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-disp.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-disp\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp/manifest ) ( ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a.2.11.0 `cat /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++/manifest /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp/manifest` ) rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a.2 ln -s libngs-c++.a.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a.2 rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a ln -s libngs-c++.a.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++-static.a ln -s libngs-c++.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++-static.a rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java ( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-java.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-bind-java\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java/manifest ) rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python ( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-python.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-bind-python\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python/manifest ) clang++ -mmacosx-version-min=10.10 -arch i386 -DNDEBUG -O3 -shared -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so.2.11.0 -install_name /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib32/libngs-sdk.so.2 -compatibility_version 2.11 -current_version 2.11.0 -flat_namespace -undefined suppress `cat /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java/manifest /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python/manifest` -L/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib -lngs-disp clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-install_name /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib32/libngs-sdk.so.2' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-compatibility_version 2.11' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-current_version 2.11.0' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-flat_namespace' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-undefined suppress' [-Wunused-command-line-argument] rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so.2 ln -s libngs-sdk.so.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so.2 rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so ln -s libngs-sdk.so.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0' =========================================================================== =======================<phase: run-depends >============================ =========================================================================== =======================<phase: stage >============================ ===> Staging for ngs-sdk-2.11.0_2 ===> Generating temporary packing list cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE ngs /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/include /bin/rm -f -r /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/include/ngs/win cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib cd: /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib: No such file or directory *** Error code 2 Stop. make: stopped in /usr/ports/biology/ngs-sdk 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