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Maintainer: [email protected] Log URL: http://beefy8.nyi.freebsd.org/data/main-armv6-default/p83aeeda2ebb7_s30253da1a9/logs/ncbi-blast+-2.12.0_6.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=main-armv6-default&build=p83aeeda2ebb7_s30253da1a9 Log: =>> Building biology/ncbi-blast+ build started at Thu Jul 28 14:41:57 UTC 2022 port directory: /usr/ports/biology/ncbi-blast+ package name: ncbi-blast+-2.12.0_6 building for: FreeBSD main-armv6-default-job-12 14.0-CURRENT FreeBSD 14.0-CURRENT 1400064 arm maintained by: [email protected] Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400063 Jail OSVERSION: 1400064 Job Id: 12 !!! Jail is newer than host. (Jail: 1400064, Host: 1400063) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1400064 UNAME_v=FreeBSD 14.0-CURRENT 1400064 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- AR="ar cr" --without-boost --libdir=/usr/local/lib/ncbi-tools++ --without-openmp --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-str ict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/ncbi-blast+" EXAMPLESDIR="share/examples/ncbi-blast+" DATADIR="share/ncbi-blast+" WWWDIR="www/ncbi-blast+" ETCDIR="etc/ncbi-blast+" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-blast+ DOCSDIR=/usr/local/share/doc/ncbi-blast+ EXAMPLESDIR=/usr/local/share/examples/ncbi-blast+ WWWDIR=/usr/local/www/ncbi-blast+ ETCDIR=/usr/local/etc/ncbi-blast+ --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: armv6-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: armv6-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: armv6-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400064 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License PD accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> ncbi-blast+-2.12.0_6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.18.3.pkg [main-armv6-default-job-12] Installing pkg-1.18.3... [main-armv6-default-job-12] Extracting pkg-1.18.3: .......... done ===> ncbi-blast+-2.12.0_6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-blast+-2.12.0_6 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.12.0_6 for building =========================================================================== =======================<phase: checksum >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.12.0_6 for building <snip> /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc 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/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/status/.dbapi.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C driver -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/util/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/util/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT util/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ftds95/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ftds100/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/mysql/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT mysql/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/samples/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT samples/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/handle_stack.cpp. /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/exception.cpp -o exception.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/public.cpp -o public.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem 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-stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 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-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=be1971a6-0e83-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -L/usr/local/lib -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib -lm -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C util -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/local/bin/gmake -C ctlib -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/local/bin/gmake -C ftds95 -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' /usr/local/bin/gmake -C ftds100 -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /usr/local/bin/gmake -C ftds-default -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /usr/local/bin/gmake -C mysql -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/local/bin/gmake -C odbc -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w mark-as-disabled gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -C samples -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C simple -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/simple' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/simple' /usr/local/bin/gmake -C lang_bind -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C objects -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/Makefile.sources builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects -w all Platform not defined for FreeBSD arm -- please fix me libunwind: personality function returned unknown result 5 libunwind: _Unwind_Resume - _Unwind_Resume() can't return gmake[6]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.module:42: omssa.files] Segmentation fault (core dumped) gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/Makefile.sources:24: all] Error 2 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/usr/local/bin/gmake -w"; export MAKE; \ ( cd $i && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /usr/local/bin/gmake -w -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/omssa' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/omssa' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' FAILED: src/objects/Makefile.sources gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.meta_l:299: sources.usr] Error 1 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.meta_l:310: sources.usr.locked] Error 2 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build' gmake[1]: *** [Makefile:24: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++' *** Error code 1 Stop. make: stopped in /usr/ports/biology/ncbi-blast+
